Variant report

Variant	rs11812501
Chromosome Location	chr10:18963551-18963552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:18956344..18959967-chr10:18962484..18965500,3	K562	blood:
2	chr10:18962456..18966517-chr10:18966877..18973376,6	K562	blood:
3	chr10:18963187..18965874-chr10:21329596..21331869,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1027193	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1055116	0.82[ASN][1000 genomes]
rs10741129	0.82[ASN][1000 genomes]
rs11015435	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11540309	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593617	0.83[AMR][1000 genomes]
rs11597737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11812341	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11815228	0.82[AMR][1000 genomes]
rs12098599	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12762481	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12762752	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12764334	0.82[AMR][1000 genomes]
rs12764398	0.81[AMR][1000 genomes]
rs12765026	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12765238	0.82[AMR][1000 genomes]
rs12766105	0.84[AMR][1000 genomes]
rs12766314	0.82[AMR][1000 genomes]
rs12767046	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767923	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12769425	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12770851	0.85[AMR][1000 genomes]
rs12772009	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12772522	0.84[AMR][1000 genomes]
rs12774519	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12774593	0.81[AMR][1000 genomes]
rs12775419	0.82[AMR][1000 genomes]
rs12778035	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12779018	0.90[EUR][1000 genomes]
rs12779694	0.84[AMR][1000 genomes]
rs12780652	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12781208	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12782882	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12784555	0.89[EUR][1000 genomes]
rs12784711	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12784986	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12785031	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2130531	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2171922	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2228645	0.81[AMR][1000 genomes]
rs34237250	0.94[AMR][1000 genomes]
rs34359432	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740104	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4237349	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4310518	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4468242	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4573590	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4575162	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4628589	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4747355	0.82[AMR][1000 genomes]
rs4748487	0.82[AMR][1000 genomes]
rs4748490	0.83[AMR][1000 genomes]
rs4748496	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748497	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4748498	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748499	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55927700	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61663155	0.85[AMR][1000 genomes]
rs61842187	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482597	0.84[ASN][1000 genomes]
rs7071300	0.85[AMR][1000 genomes]
rs7072624	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7072963	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7074644	0.85[AMR][1000 genomes]
rs7075135	0.83[AMR][1000 genomes]
rs7085318	0.83[AMR][1000 genomes]
rs7086757	0.82[AMR][1000 genomes]
rs7087030	0.82[ASN][1000 genomes]
rs7089083	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093454	0.83[AMR][1000 genomes]
rs7096923	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099423	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7896918	0.84[ASN][1000 genomes]
rs7897159	0.95[EUR][1000 genomes]
rs7904016	0.84[AMR][1000 genomes]
rs7904949	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7905365	0.82[AMR][1000 genomes]
rs7907891	0.83[AMR][1000 genomes]
rs7909814	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7919487	0.84[AMR][1000 genomes]
rs7922005	0.87[ASN][1000 genomes]
rs7923480	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11812501	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:18949600-18972000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18951000-18965800	Weak transcription	Colonic Mucosa	Colon
4	chr10:18951000-18966600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:18951000-18967400	Weak transcription	Esophagus	oesophagus
6	chr10:18951000-18971800	Weak transcription	Spleen	Spleen
7	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:18951200-18964400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
10	chr10:18954000-18966600	Strong transcription	Dnd41	blood
11	chr10:18954400-18964400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:18954400-18967200	Weak transcription	Gastric	stomach
13	chr10:18954400-18969200	Weak transcription	Right Ventricle	heart
14	chr10:18954400-18973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:18954800-18964800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:18955000-18972600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:18955200-18967600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:18955400-18969200	Weak transcription	Brain Angular Gyrus	brain
19	chr10:18955600-18966600	Strong transcription	Primary B cells from cord blood	blood
20	chr10:18955600-18966600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:18955600-18968000	Weak transcription	Brain Substantia Nigra	brain
22	chr10:18955800-18966200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:18955800-18966600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:18956000-18966200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:18956000-18966200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:18956000-18966600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:18956000-18966800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:18956000-18970000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:18956000-18972200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:18956200-18973200	Weak transcription	Small Intestine	intestine
31	chr10:18956400-18966800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:18956400-18967800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:18956600-18963800	Strong transcription	Brain Germinal Matrix	brain
34	chr10:18956600-18964800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:18956600-18965000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:18956600-18965200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:18956800-18963600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:18956800-18965400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:18956800-18966600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:18956800-18966600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:18956800-18966800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:18957000-18965200	Strong transcription	Fetal Muscle Leg	muscle
43	chr10:18957000-18966600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:18957200-18965000	Strong transcription	HepG2	liver
45	chr10:18957200-18966200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr10:18957400-18965600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:18957400-18968400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:18957400-18971600	Weak transcription	Fetal Heart	heart
49	chr10:18957600-18964800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:18957600-18965200	Strong transcription	Placenta	Placenta

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