Variant report

Variant	rs7909814
Chromosome Location	chr10:18899231-18899232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18897158..18899309-chr10:18901969..18904753,2	K562	blood:
2	chr10:18891764..18894660-chr10:18898788..18901660,3	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1027193	0.93[AMR][1000 genomes]
rs10508562	0.81[EUR][1000 genomes]
rs10508563	0.81[EUR][1000 genomes]
rs11014981	0.89[ASN][1000 genomes]
rs11015435	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11511084	0.90[ASN][1000 genomes]
rs11540309	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11593617	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11597110	0.85[EUR][1000 genomes]
rs11597737	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11812341	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11812501	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11815228	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12098599	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12762481	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12762752	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12764334	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12764398	0.81[EUR][1000 genomes]
rs12765026	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12765238	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12766105	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12766314	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12767046	0.86[AMR][1000 genomes]
rs12767923	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12769425	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12770851	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12772009	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12772522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12773254	0.82[EUR][1000 genomes]
rs12774519	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12774593	0.81[EUR][1000 genomes]
rs12775419	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12778035	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12778992	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12779694	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12780652	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12781208	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12782882	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12784711	0.93[AMR][1000 genomes]
rs12784986	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12785031	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1880681	0.86[EUR][1000 genomes]
rs2130531	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2171922	0.84[EUR][1000 genomes]
rs2228645	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34237250	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34359432	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35766272	0.82[AMR][1000 genomes]
rs3740104	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4237349	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4310518	0.94[AMR][1000 genomes]
rs4314963	0.81[EUR][1000 genomes]
rs4445544	0.82[ASN][1000 genomes]
rs4468242	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4573590	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4575162	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4628589	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4747355	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748487	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748490	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4748496	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748497	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748498	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748499	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55927700	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56386348	0.81[EUR][1000 genomes]
rs61663155	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61842187	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7071300	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7072624	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7072963	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7074644	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7075135	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085318	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7086757	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7089083	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7093454	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7096923	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7099423	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7897159	0.84[EUR][1000 genomes]
rs7904016	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904949	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7905365	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7907891	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7919487	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7923480	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7909814	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:18866600-18899400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:18867600-18899600	Weak transcription	Placenta	Placenta
7	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
12	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
13	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
15	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:18872400-18899600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
23	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:18877200-18899400	Weak transcription	K562	blood
25	chr10:18877200-18899600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
27	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
28	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
29	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
30	chr10:18877600-18900000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:18877600-18916400	Weak transcription	Gastric	stomach
32	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
34	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:18882200-18899400	Strong transcription	Liver	Liver
36	chr10:18884200-18899800	Weak transcription	Fetal Lung	lung
37	chr10:18884200-18900200	Weak transcription	Fetal Brain Female	brain
38	chr10:18884200-18900400	Weak transcription	Ovary	ovary
39	chr10:18884200-18900600	Weak transcription	Brain Germinal Matrix	brain
40	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
41	chr10:18884400-18900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:18884600-18900200	Weak transcription	Fetal Thymus	thymus
43	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:18885200-18901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:18885200-18904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:18885400-18900200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:18885400-18900600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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