Variant report
| Variant | rs7920678 |
|---|---|
| Chromosome Location | chr10:37712962-37712963 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD30A-5 | chr10:37707165-37730322 | NONHSAT012779 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs1321965 | 0.83[AMR][1000 genomes] |
| rs16936499 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7902123 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7918840 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2750892 | chr10:37525594-37733381 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv975007 | chr10:37677218-37743945 | ZNF genes & repeats Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv971862 | chr10:37694928-37716896 | Active TSS ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
