Variant report

Variant	rs7921632
Chromosome Location	chr10:52170765-52170766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52163174..52165033-chr10:52169624..52171788,2	K562	blood:
2	chr10:52169351..52171614-chr10:52383137..52385648,2	K562	blood:
3	chr10:52169460..52174968-chr10:52176430..52182227,8	K562	blood:

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10490963	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490964	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11005626	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11005959	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12257419	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12262259	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1369860	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17438825	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17440448	0.89[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17518471	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17519121	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17519380	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17721658	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17721694	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17721713	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17778152	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916568	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916569	0.89[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1916571	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2060560	0.91[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2064759	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2117961	0.91[ASN][1000 genomes]
rs2117962	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255387	0.90[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs2255720	0.99[ASN][1000 genomes]
rs2255849	0.91[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2255853	0.92[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2255859	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs2574955	0.91[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2574956	0.92[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2574975	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2574981	0.99[ASN][1000 genomes]
rs2688875	0.83[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2688877	0.93[ASN][1000 genomes]
rs2688879	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2842102	0.99[ASN][1000 genomes]
rs2842105	0.99[ASN][1000 genomes]
rs2842106	0.99[ASN][1000 genomes]
rs2842107	0.91[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs2842109	0.83[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34672995	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34928652	0.92[ASN][1000 genomes]
rs3802537	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4935152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935673	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935703	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4935713	0.87[ASN][1000 genomes]
rs4935729	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55773344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861418	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56078228	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56080689	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133398	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56225400	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56268559	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56277433	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61559519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61741330	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61856761	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856763	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856782	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856787	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61856788	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61856793	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61856794	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61856795	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61856828	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61856832	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61858062	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61858064	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61858065	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61858068	0.89[ASN][1000 genomes]
rs61858069	0.92[ASN][1000 genomes]
rs61858206	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858207	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067626	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068430	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7069115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082805	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092753	0.92[ASN][1000 genomes]
rs72801752	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72801754	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801768	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72801775	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72801776	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72801781	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7392702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7475420	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs884880	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv521273	chr10:52051645-52197847	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv948006	chr10:52127164-52177684	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52147000-52176600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:52157000-52170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:52157200-52177600	Weak transcription	Spleen	Spleen
4	chr10:52157800-52172000	Weak transcription	Fetal Lung	lung
5	chr10:52157800-52173200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:52157800-52175400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:52157800-52176800	Weak transcription	Lung	lung
8	chr10:52158800-52172200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:52160800-52176800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:52163600-52176800	Weak transcription	Thymus	Thymus
11	chr10:52164400-52172400	Weak transcription	Ovary	ovary
12	chr10:52164400-52173800	Weak transcription	Psoas Muscle	Psoas
13	chr10:52164400-52174000	Weak transcription	Brain Angular Gyrus	brain
14	chr10:52164400-52177600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:52164600-52171000	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:52164600-52176600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:52165200-52171600	Weak transcription	Brain Anterior Caudate	brain
18	chr10:52165400-52171800	Weak transcription	Liver	Liver
19	chr10:52166600-52175800	Weak transcription	Primary T cells from cord blood	blood
20	chr10:52166600-52177400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:52166800-52171400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:52166800-52177200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:52166800-52177400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:52167000-52176800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:52167000-52176800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:52167000-52177200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:52167000-52177400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:52167600-52173000	Weak transcription	HepG2	liver
29	chr10:52167600-52176800	Weak transcription	Primary B cells from cord blood	blood
30	chr10:52167800-52171400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:52168000-52177400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:52168200-52171800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:52168600-52176200	Weak transcription	Right Atrium	heart
34	chr10:52168600-52176600	Weak transcription	Fetal Brain Male	brain
35	chr10:52168800-52171200	Enhancers	NHDF-Ad	bronchial
36	chr10:52169000-52172400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:52169200-52171600	Enhancers	Osteobl	bone
38	chr10:52169400-52170800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:52169400-52171400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr10:52169600-52170800	Enhancers	NHEK	skin
41	chr10:52169600-52171800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:52169600-52172200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:52169800-52172200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:52170000-52170800	Enhancers	NHLF	lung
45	chr10:52170000-52171400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:52170000-52172000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:52170000-52172200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:52170000-52174200	Enhancers	Brain Substantia Nigra	brain
49	chr10:52170200-52171200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr10:52170200-52171200	Transcr. at gene 5' and 3'	K562	blood

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