Variant report

Variant	rs7927843
Chromosome Location	chr11:108209408-108209409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4987910	0.89[AFR][1000 genomes]
rs4987935	1.00[AFR][1000 genomes]
rs4987967	1.00[AFR][1000 genomes]
rs4987998	1.00[AFR][1000 genomes]
rs4988079	1.00[AFR][1000 genomes]
rs4988107	1.00[AFR][1000 genomes]
rs55894628	1.00[AFR][1000 genomes]
rs55987601	1.00[AFR][1000 genomes]
rs57464493	0.89[AFR][1000 genomes]
rs58745314	0.89[AFR][1000 genomes]
rs61338316	1.00[AFR][1000 genomes]
rs7108824	0.89[AFR][1000 genomes]
rs73545024	1.00[AFR][1000 genomes]
rs73545037	1.00[AFR][1000 genomes]
rs73545062	1.00[AFR][1000 genomes]
rs73545093	0.89[AFR][1000 genomes]
rs73561573	0.89[AFR][1000 genomes]
rs73561577	0.89[AFR][1000 genomes]
rs73561578	0.89[AFR][1000 genomes]
rs73561585	0.89[AFR][1000 genomes]
rs73561587	0.89[AFR][1000 genomes]
rs7949145	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv1821877	chr11:108158134-108219339	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:108147200-108210800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:108148200-108225600	Weak transcription	Esophagus	oesophagus
7	chr11:108148600-108225600	Weak transcription	Gastric	stomach
8	chr11:108149400-108211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:108149600-108209600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:108151400-108210000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:108158200-108209800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:108160200-108212600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:108160400-108211000	Strong transcription	Primary B cells from cord blood	blood
14	chr11:108161000-108209600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:108161200-108210400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr11:108176400-108225400	Weak transcription	Right Ventricle	heart
17	chr11:108182400-108220800	Weak transcription	Aorta	Aorta
18	chr11:108182400-108222200	Weak transcription	Pancreas	Pancrea
19	chr11:108182400-108223800	Weak transcription	Small Intestine	intestine
20	chr11:108187200-108211200	Weak transcription	K562	blood
21	chr11:108192000-108222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:108192200-108225400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:108193800-108224600	Weak transcription	Fetal Heart	heart
24	chr11:108195400-108226200	Strong transcription	Primary T cells from cord blood	blood
25	chr11:108196000-108210800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:108196600-108209800	Strong transcription	HSMM	muscle
27	chr11:108200400-108215000	Weak transcription	Thymus	Thymus
28	chr11:108200400-108224600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:108200600-108222000	Weak transcription	Spleen	Spleen
30	chr11:108200600-108222200	Weak transcription	Fetal Intestine Small	intestine
31	chr11:108201400-108219600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:108201400-108221200	Weak transcription	Fetal Brain Male	brain
33	chr11:108202200-108225200	Weak transcription	Colonic Mucosa	Colon
34	chr11:108202800-108221200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:108203000-108222000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:108203200-108224400	Weak transcription	Psoas Muscle	Psoas
37	chr11:108205000-108210600	Strong transcription	Fetal Thymus	thymus
38	chr11:108206400-108211200	Weak transcription	NHEK	skin
39	chr11:108206400-108212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:108206600-108211200	Weak transcription	HMEC	breast
41	chr11:108206800-108209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:108207000-108211400	Weak transcription	Fetal Intestine Large	intestine
43	chr11:108207000-108220000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:108207000-108221800	Weak transcription	Lung	lung
45	chr11:108207000-108224400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:108207000-108225400	Weak transcription	Fetal Kidney	kidney
47	chr11:108207200-108218000	Weak transcription	HepG2	liver
48	chr11:108207400-108210000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:108207400-108224400	Weak transcription	Fetal Brain Female	brain
50	chr11:108207400-108234000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links