Variant report

Variant	rs7931985
Chromosome Location	chr11:108268525-108268526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10890844	1.00[JPT][hapmap]
rs10890845	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11821299	0.82[YRI][hapmap]
rs11825355	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12278954	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17107969	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17107980	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17108024	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17108054	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[YRI][hapmap]
rs17108065	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs2234994	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.84[YRI][hapmap]
rs2235000	1.00[LWK][hapmap];0.82[YRI][hapmap]
rs2235001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2840346	1.00[GIH][hapmap]
rs28690878	1.00[GIH][hapmap]
rs3092836	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3092856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4987878	1.00[YRI][hapmap]
rs4987926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4987929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4988011	0.82[ASN][1000 genomes]
rs4988050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4988131	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55778600	1.00[ASN][1000 genomes]
rs7115351	1.00[JPT][hapmap]
rs7119429	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap]
rs7119791	0.81[AFR][1000 genomes]
rs7131306	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7948591	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7931985	C11orf65	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108265800-108271600	Weak transcription	Gastric	stomach
2	chr11:108266000-108271200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links