Variant report

Variant	rs7131306
Chromosome Location	chr11:108324816-108324817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10890837	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10890838	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10890844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890845	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890846	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212650	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212653	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212674	0.93[EUR][1000 genomes]
rs11825355	1.00[JPT][hapmap]
rs11828864	0.88[EUR][1000 genomes]
rs12274479	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278954	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107969	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17107980	1.00[JPT][hapmap]
rs17108024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108054	0.83[CHD][hapmap]
rs1801516	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs2234994	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3092836	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3092856	1.00[JPT][hapmap]
rs3092991	1.00[CEU][hapmap]
rs3092993	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs4753840	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs4753843	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754317	0.94[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs4988023	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs4988050	1.00[JPT][hapmap]
rs4988131	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs55930851	1.00[EUR][1000 genomes]
rs7115351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72992163	0.93[EUR][1000 genomes]
rs72992175	1.00[EUR][1000 genomes]
rs72992191	0.93[EUR][1000 genomes]
rs72993806	0.88[EUR][1000 genomes]
rs72997833	0.88[EUR][1000 genomes]
rs7396719	0.88[EUR][1000 genomes]
rs7931985	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7938612	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947933	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7131306	NPAT	cis	cerebellum	SCAN
rs7131306	CUL5	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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