Variant report

Variant	rs11212674
Chromosome Location	chr11:108358820-108358821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108357626..108360245-chr11:108366934..108369201,3	MCF-7	breast:
2	chr11:108357774..108359460-chr11:108388909..108390796,2	K562	blood:
3	chr11:108338406..108340928-chr11:108356755..108359282,2	K562	blood:
4	chr11:108357100..108360869-chr11:108361968..108364504,3	K562	blood:
5	chr11:108336661..108338950-chr11:108358713..108361472,2	K562	blood:

Variant related genes	Relation type
ENSG00000178202	Chromatin interaction
ENSG00000221607	Chromatin interaction
ENSG00000166323	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10890837	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890838	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890844	0.93[EUR][1000 genomes]
rs10890845	0.89[EUR][1000 genomes]
rs10890846	0.88[EUR][1000 genomes]
rs11212650	0.93[EUR][1000 genomes]
rs11212653	0.94[EUR][1000 genomes]
rs11828864	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12274479	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12278954	0.93[EUR][1000 genomes]
rs17108024	0.93[EUR][1000 genomes]
rs4753840	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753843	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754317	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55930851	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72992163	0.86[EUR][1000 genomes]
rs72992175	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72992191	0.88[EUR][1000 genomes]
rs72993806	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72997833	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7396719	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7938612	0.92[EUR][1000 genomes]
rs7947933	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108338200-108359000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:108338200-108367600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108338600-108364800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:108338600-108367200	Weak transcription	A549	lung
5	chr11:108338600-108367800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:108338800-108367200	Weak transcription	HSMMtube	muscle
7	chr11:108338800-108367400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:108338800-108367400	Weak transcription	HUVEC	blood vessel
9	chr11:108338800-108367600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:108338800-108367600	Weak transcription	Small Intestine	intestine
11	chr11:108338800-108368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:108339000-108359000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:108339000-108367200	Weak transcription	NHEK	skin
14	chr11:108339000-108367400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:108339000-108368000	Weak transcription	Primary B cells from cord blood	blood
16	chr11:108339000-108368000	Weak transcription	Fetal Brain Female	brain
17	chr11:108339200-108363000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:108339200-108367400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:108339200-108367600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:108339200-108367800	Weak transcription	Fetal Brain Male	brain
21	chr11:108339200-108368000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:108343000-108361800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:108344000-108361800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:108344000-108362000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:108344000-108363000	Strong transcription	Dnd41	blood
26	chr11:108344200-108361800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:108344200-108362000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:108344600-108361000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:108345800-108359000	Weak transcription	Gastric	stomach
30	chr11:108346000-108364800	Weak transcription	Fetal Heart	heart
31	chr11:108346000-108367200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:108346000-108367600	Weak transcription	Brain Substantia Nigra	brain
33	chr11:108347400-108361800	Strong transcription	Liver	Liver
34	chr11:108348400-108364800	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:108348400-108367400	Weak transcription	Colonic Mucosa	Colon
36	chr11:108348400-108367600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:108348600-108367200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:108348600-108367200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:108348600-108367400	Weak transcription	Esophagus	oesophagus
40	chr11:108348600-108367600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:108348800-108367600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:108349200-108367200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:108350000-108367400	Weak transcription	Hela-S3	cervix
44	chr11:108350200-108359200	Weak transcription	NHDF-Ad	bronchial
45	chr11:108350200-108367400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:108350200-108367400	Weak transcription	Fetal Kidney	kidney
47	chr11:108350400-108367400	Weak transcription	Brain Anterior Caudate	brain
48	chr11:108350800-108362000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:108351400-108359600	Strong transcription	Ovary	ovary
50	chr11:108351400-108360200	Strong transcription	Fetal Lung	lung

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