Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:108333493..108335772-chr11:108366230..108368651,2	MCF-7	breast:
2	chr11:108332946..108340923-chr11:108359972..108371658,26	K562	blood:
3	chr11:108332332..108333917-chr11:108462867..108465354,2	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction
ENSG00000178202	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10890837	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890838	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890844	1.00[EUR][1000 genomes]
rs10890845	0.96[EUR][1000 genomes]
rs10890846	0.95[EUR][1000 genomes]
rs11212650	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212653	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11212674	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11828864	0.88[EUR][1000 genomes]
rs12274479	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278954	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17108024	1.00[EUR][1000 genomes]
rs4753840	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753843	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4754317	0.88[EUR][1000 genomes]
rs72992163	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72992175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72992191	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72993806	0.88[EUR][1000 genomes]
rs72997833	0.88[EUR][1000 genomes]
rs7396719	0.88[EUR][1000 genomes]
rs7938612	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7947933	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv971961	chr11:108329756-108333990	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108333400-108336200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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