Variant report

Variant	rs10890844
Chromosome Location	chr11:108334127-108334128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108333493..108335772-chr11:108366230..108368651,2	MCF-7	breast:
2	chr11:108332946..108340923-chr11:108359972..108371658,26	K562	blood:
3	chr11:108333954..108342521-chr11:108361561..108373383,35	K562	blood:
4	chr11:108333831..108335607-chr11:108336969..108339271,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166323	Chromatin interaction
ENSG00000178202	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10890837	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10890838	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10890845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890846	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212650	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212653	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212674	0.93[EUR][1000 genomes]
rs11825355	1.00[JPT][hapmap]
rs11828864	0.88[EUR][1000 genomes]
rs12274479	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278954	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107969	1.00[JPT][hapmap]
rs17107980	1.00[JPT][hapmap]
rs17108024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801516	1.00[CEU][hapmap]
rs2234994	1.00[JPT][hapmap]
rs3092836	1.00[JPT][hapmap]
rs3092856	1.00[JPT][hapmap]
rs3092991	1.00[CEU][hapmap]
rs3092993	1.00[CEU][hapmap]
rs4753840	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4753843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754317	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs4988023	1.00[CEU][hapmap]
rs4988050	1.00[JPT][hapmap]
rs4988131	1.00[JPT][hapmap]
rs55930851	1.00[EUR][1000 genomes]
rs7115351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7131306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72992163	0.93[EUR][1000 genomes]
rs72992175	1.00[EUR][1000 genomes]
rs72992191	0.93[EUR][1000 genomes]
rs72993806	0.88[EUR][1000 genomes]
rs72997833	0.88[EUR][1000 genomes]
rs7396719	0.88[EUR][1000 genomes]
rs7931985	1.00[JPT][hapmap]
rs7938612	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947933	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108333400-108336200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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