Variant report
| Variant | rs7938612 |
|---|---|
| Chromosome Location | chr11:108326398-108326399 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:108325901..108328395-chr11:108336463..108338293,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166323 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10890837 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10890838 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10890844 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10890845 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10890846 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11212650 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11212653 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11212674 | 0.92[EUR][1000 genomes] |
| rs11828864 | 0.87[EUR][1000 genomes] |
| rs12274479 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12278954 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17108024 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4753840 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4753843 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4754317 | 0.87[EUR][1000 genomes] |
| rs55930851 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72992163 | 0.92[EUR][1000 genomes] |
| rs72992175 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72992191 | 0.92[EUR][1000 genomes] |
| rs72993806 | 0.87[EUR][1000 genomes] |
| rs72997833 | 0.87[EUR][1000 genomes] |
| rs7396719 | 0.87[EUR][1000 genomes] |
| rs7947933 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052254 | chr11:108122683-108845008 | Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv541164 | chr11:108122683-108845008 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv832263 | chr11:108183372-108384391 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
