Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11020537	0.84[EUR][1000 genomes]
rs11020538	0.84[EUR][1000 genomes]
rs11020539	0.84[EUR][1000 genomes]
rs12785450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806242	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395385	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1553601	0.81[EUR][1000 genomes]
rs1553602	0.84[EUR][1000 genomes]
rs1553603	0.84[EUR][1000 genomes]
rs57856352	0.83[ASN][1000 genomes]
rs6483266	0.84[EUR][1000 genomes]
rs67232024	0.83[ASN][1000 genomes]
rs67812366	0.83[ASN][1000 genomes]
rs7102422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107113	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7109132	0.83[ASN][1000 genomes]
rs7109569	0.84[EUR][1000 genomes]
rs7121933	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7123395	0.84[EUR][1000 genomes]
rs7123628	0.84[EUR][1000 genomes]
rs71460609	0.81[EUR][1000 genomes]
rs71480693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927828	0.83[ASN][1000 genomes]
rs7932290	0.83[ASN][1000 genomes]
rs7934467	0.83[ASN][1000 genomes]
rs7937916	0.84[EUR][1000 genomes]
rs7941375	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9888266	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv975968	chr11:93591410-93597199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93589600-93594600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:93589800-93595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:93591200-93594800	Weak transcription	Osteobl	bone
4	chr11:93591800-93594600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:93592000-93594800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:93593400-93594800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:93593800-93594400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:93593800-93595200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:93594000-93594400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:93594200-93594400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:93594200-93594400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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