Variant report

Variant	rs1553603
Chromosome Location	chr11:93581698-93581699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93574931..93577812-chr11:93581289..93582861,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11020537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020539	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020543	0.87[ASN][1000 genomes]
rs11821265	0.81[ASN][1000 genomes]
rs11826139	0.85[ASN][1000 genomes]
rs11828927	0.92[ASN][1000 genomes]
rs1553601	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483266	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102422	0.84[EUR][1000 genomes]
rs7109569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123628	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460609	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941015	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:93576600-93581800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:93576600-93583000	Weak transcription	Esophagus	oesophagus
7	chr11:93578400-93583800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:93579000-93582600	Weak transcription	NHDF-Ad	bronchial
9	chr11:93579000-93582800	Weak transcription	Placenta	Placenta
10	chr11:93579000-93583200	Weak transcription	HMEC	breast
11	chr11:93579200-93582800	Weak transcription	Osteobl	bone
12	chr11:93579600-93583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:93579600-93583000	Weak transcription	NHEK	skin
14	chr11:93579800-93582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:93579800-93582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:93579800-93582800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:93579800-93582800	Weak transcription	NH-A	brain
18	chr11:93579800-93583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:93579800-93583000	Weak transcription	NHLF	lung
20	chr11:93579800-93583200	Weak transcription	HSMM	muscle
21	chr11:93580000-93583000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:93580600-93582600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:93580600-93582800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:93581000-93582800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:93581000-93582800	Enhancers	Stomach Mucosa	stomach
26	chr11:93581600-93583000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links