Variant report

Variant	rs11826139
Chromosome Location	chr11:93577817-93577818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93573034..93574982-chr11:93577351..93579651,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11020537	0.85[ASN][1000 genomes]
rs11020538	0.85[ASN][1000 genomes]
rs11020539	0.85[ASN][1000 genomes]
rs11020543	0.94[ASN][1000 genomes]
rs11821265	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11826053	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11828927	0.84[ASN][1000 genomes]
rs1553601	0.85[ASN][1000 genomes]
rs1553602	0.85[ASN][1000 genomes]
rs1553603	0.85[ASN][1000 genomes]
rs6483266	0.85[ASN][1000 genomes]
rs7109569	0.85[ASN][1000 genomes]
rs7123395	0.85[ASN][1000 genomes]
rs7123628	0.85[ASN][1000 genomes]
rs7937916	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv826039	chr11:93577753-93578507	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1952279	chr11:93577818-93578408	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
2	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:93575800-93578200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:93575800-93578200	Weak transcription	HSMMtube	muscle
7	chr11:93575800-93578400	Weak transcription	Osteobl	bone
8	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:93576000-93578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:93576000-93578200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:93576000-93578200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:93576600-93581800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:93576600-93583000	Weak transcription	Esophagus	oesophagus
15	chr11:93577400-93578000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:93577400-93578200	Weak transcription	NHDF-Ad	bronchial
17	chr11:93577400-93578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:93577400-93579600	Enhancers	NHEK	skin
19	chr11:93577600-93579000	Enhancers	Placenta	Placenta
20	chr11:93577800-93579000	Enhancers	HMEC	breast
21	chr11:93577800-93579200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:93577800-93580000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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