Variant report

Variant	rs11020543
Chromosome Location	chr11:93583857-93583858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:93583216-93583876	HepG2	liver:	n/a	n/a
2	MAX	chr11:93583227-93583861	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:93583525-93583860	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr11:93583231-93583924	H1-hESC	embryonic stem cell:	n/a	chr11:93583451-93583465 chr11:93583540-93583549
5	MXI1	chr11:93582764-93584022	SK-N-SH	brain:	n/a	n/a
6	FOXA1	chr11:93583799-93584082	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
VSTM5	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10831108	0.89[AFR][1000 genomes]
rs10831109	0.92[AFR][1000 genomes]
rs11020537	0.87[ASN][1000 genomes]
rs11020538	0.87[ASN][1000 genomes]
rs11020539	0.87[ASN][1000 genomes]
rs11020544	0.95[AFR][1000 genomes]
rs11020546	0.95[AFR][1000 genomes]
rs11020548	0.92[AFR][1000 genomes]
rs11020549	0.92[AFR][1000 genomes]
rs11821265	0.90[ASN][1000 genomes]
rs11823708	0.94[AFR][1000 genomes]
rs11826139	0.94[ASN][1000 genomes]
rs12223139	0.94[AFR][1000 genomes]
rs1553601	0.87[ASN][1000 genomes]
rs1553602	0.87[ASN][1000 genomes]
rs1553603	0.87[ASN][1000 genomes]
rs1857920	0.94[AFR][1000 genomes]
rs6483266	0.87[ASN][1000 genomes]
rs7109569	0.87[ASN][1000 genomes]
rs7111141	0.94[AFR][1000 genomes]
rs7114244	0.94[AFR][1000 genomes]
rs7123395	0.87[ASN][1000 genomes]
rs7123628	0.87[ASN][1000 genomes]
rs7925205	0.94[AFR][1000 genomes]
rs7925796	0.94[AFR][1000 genomes]
rs7937916	0.87[ASN][1000 genomes]
rs7940881	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
4	chr11:93582800-93584000	Active TSS	Brain Angular Gyrus	brain
5	chr11:93582800-93584000	Active TSS	Colon Smooth Muscle	Colon
6	chr11:93582800-93584000	Active TSS	Rectal Smooth Muscle	rectum
7	chr11:93582800-93584200	Enhancers	Fetal Brain Male	brain
8	chr11:93582800-93584200	Active TSS	Fetal Kidney	kidney
9	chr11:93582800-93584200	Active TSS	Fetal Lung	lung
10	chr11:93583000-93584000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:93583000-93584000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:93583000-93584000	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr11:93583000-93584200	Active TSS	Fetal Brain Female	brain
16	chr11:93583000-93584200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr11:93583000-93584200	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr11:93583200-93584000	Active TSS	Colonic Mucosa	Colon
19	chr11:93583200-93584000	Active TSS	Duodenum Mucosa	Duodenum
20	chr11:93583200-93584000	Active TSS	Fetal Intestine Large	intestine
21	chr11:93583200-93584000	Active TSS	Fetal Stomach	stomach
22	chr11:93583200-93584000	Active TSS	Stomach Smooth Muscle	stomach
23	chr11:93583200-93584000	Active TSS	Osteobl	bone
24	chr11:93583200-93584200	Enhancers	Placenta	Placenta
25	chr11:93583200-93584200	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr11:93583400-93584000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:93583400-93584000	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:93583400-93584000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:93583400-93584000	Active TSS	Brain Germinal Matrix	brain
30	chr11:93583600-93584000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:93583600-93584200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:93583800-93584000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:93583800-93584000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:93583800-93584000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:93583800-93584000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:93583800-93584000	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr11:93583800-93584000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr11:93583800-93584200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:93583800-93584200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr11:93583800-93584200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:93583800-93584200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:93583800-93584200	Active TSS	Adipose Nuclei	Adipose
43	chr11:93583800-93584200	Weak transcription	Aorta	Aorta
44	chr11:93583800-93584200	Bivalent Enhancer	Fetal Muscle Leg	muscle
45	chr11:93583800-93584400	Enhancers	Stomach Mucosa	stomach
46	chr11:93583800-93584600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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