Variant report

Variant	rs11020537
Chromosome Location	chr11:93582904-93582905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11020538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020539	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020543	0.87[ASN][1000 genomes]
rs11821265	0.81[ASN][1000 genomes]
rs11826139	0.85[ASN][1000 genomes]
rs11828927	0.92[ASN][1000 genomes]
rs1553601	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919533	0.81[CHB][hapmap]
rs6483266	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102422	0.84[EUR][1000 genomes]
rs7109569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123628	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460609	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941015	0.84[EUR][1000 genomes]
rs9888156	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93576600-93583000	Weak transcription	Esophagus	oesophagus
2	chr11:93578400-93583800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:93579000-93583200	Weak transcription	HMEC	breast
4	chr11:93579600-93583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93579600-93583000	Weak transcription	NHEK	skin
6	chr11:93579800-93583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:93579800-93583000	Weak transcription	NHLF	lung
8	chr11:93579800-93583200	Weak transcription	HSMM	muscle
9	chr11:93580000-93583000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:93581600-93583000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:93582600-93583000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
12	chr11:93582600-93583000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr11:93582600-93583000	Enhancers	Right Atrium	heart
14	chr11:93582600-93583200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
18	chr11:93582800-93583000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr11:93582800-93583000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:93582800-93583000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:93582800-93583000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:93582800-93583000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:93582800-93583000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:93582800-93583000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:93582800-93583000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:93582800-93583000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:93582800-93583000	Active TSS	Colonic Mucosa	Colon
28	chr11:93582800-93583000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:93582800-93583000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr11:93582800-93583000	Enhancers	Fetal Muscle Leg	muscle
31	chr11:93582800-93583000	Enhancers	Fetal Stomach	stomach
32	chr11:93582800-93583000	Enhancers	NH-A	brain
33	chr11:93582800-93583200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr11:93582800-93583200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:93582800-93583200	Active TSS	Brain Germinal Matrix	brain
36	chr11:93582800-93583200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
37	chr11:93582800-93583200	Enhancers	Brain Substantia Nigra	brain
38	chr11:93582800-93583200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr11:93582800-93583200	Flanking Active TSS	Fetal Intestine Large	intestine
40	chr11:93582800-93583200	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr11:93582800-93583200	Flanking Active TSS	Placenta	Placenta
42	chr11:93582800-93583200	Enhancers	Gastric	stomach
43	chr11:93582800-93583200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr11:93582800-93583200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr11:93582800-93583200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
46	chr11:93582800-93583200	Flanking Active TSS	Stomach Mucosa	stomach
47	chr11:93582800-93583200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:93582800-93583200	Flanking Active TSS	K562	blood
49	chr11:93582800-93583200	Flanking Active TSS	Osteobl	bone
50	chr11:93582800-93583400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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