Variant report

Variant	rs10831109
Chromosome Location	chr11:93586751-93586752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:93586725-93586775	AoSMC	blood vessel:	n/a
2	chr11:93586725-93586775	PrEC	prostate:	n/a
3	chr11:93586725-93586775	HCM	heart:	n/a
4	chr11:93586725-93586775	AG04449	skin:	fetal
5	chr11:93586725-93586775	HIPEpiC	eye:	n/a
6	chr11:93586725-93586775	IMR90	lung:	fetal
7	chr11:93586725-93586775	HNPCEpiC	eye:	n/a
8	chr11:93586725-93586775	A549	lung:	n/a
9	chr11:93586725-93586775	AG09319	gingival:	n/a
10	chr11:93586725-93586775	Jurkat	blood:	n/a
11	chr11:93586725-93586775	K562	blood:	n/a
12	chr11:93586725-93586775	MCF-7	breast:	n/a
13	chr11:93586725-93586775	Caco-2	colon:	n/a
14	chr11:93586725-93586775	T-47D	breast:	n/a
15	chr11:93586725-93586775	HRE	kidney:	n/a
16	chr11:93586725-93586775	GM12891	blood:	n/a
17	chr11:93586725-93586775	U87	brain:	n/a
18	chr11:93586725-93586775	AG10803	skin:	n/a
19	chr11:93586725-93586775	Hepatocyte	liver:	n/a
20	chr11:93586725-93586775	CMK	blood:	n/a
21	chr11:93586725-93586775	NHDF-neo	bronchial:	n/a
22	chr11:93586725-93586775	ProgFib	skin:	n/a
23	chr11:93586725-93586775	HRCEpiC	kidney:	n/a
24	chr11:93586725-93586775	HMEC	breast:	n/a
25	chr11:93586725-93586775	BE2_C	brain:	n/a
26	chr11:93586725-93586775	HEK293	kidney:	embryo
27	chr11:93586725-93586775	Hela-S3	cervix:	n/a
28	chr11:93586725-93586775	RPTEC	kidney:	n/a
29	chr11:93586725-93586775	HRPEpiC	eye:	n/a
30	chr11:93586725-93586775	AG04450	lung:	fetal
31	chr11:93586725-93586775	ECC-1	luminal epithelium:	n/a
32	chr11:93586725-93586775	NB4	blood:	n/a
33	chr11:93586725-93586775	GM12878	blood:	n/a
34	chr11:93586725-93586775	SAEC	small airway:	n/a
35	chr11:93586725-93586775	HUVEC	blood vessel:	n/a
36	chr11:93586725-93586775	HCF	heart:	n/a
37	chr11:93586725-93586775	NT2-D1	testis:	n/a
38	chr11:93586725-93586775	NHBE	bronchial:	n/a
39	chr11:93586725-93586775	H1-hESC	embryonic stem cell:	embryo
40	chr11:93586725-93586775	SK-N-MC	brain:	n/a
41	chr11:93586725-93586775	AG09309	skin:	n/a
42	chr11:93586725-93586775	SK-N-SH_RA	brain:	n/a
43	chr11:93586725-93586775	PANC-1	pancreas:	n/a
44	chr11:93586725-93586775	HCT-116	colon:	n/a
45	chr11:93586725-93586775	BJ	skin:	n/a
46	chr11:93586725-93586775	SK-N-SH	brain:	n/a
47	chr11:93586725-93586775	HPAEpiC	pulmonary alveolar:	n/a
48	chr11:93586725-93586775	HAEpiC	amniotic membrane:	n/a
49	chr11:93586725-93586775	PFSK-1	brain:	n/a
50	chr11:93586725-93586775	MCF10A-Er-Src	breast:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93584944..93588015-chr11:93589210..93592115,3	K562	blood:
2	chr11:93581163..93583704-chr11:93585617..93587687,2	K562	blood:

No data

Variant related genes	Relation type
VSTM5	CpG island
ENSG00000214376	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10831108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831111	0.92[ASN][1000 genomes]
rs10831112	0.91[ASN][1000 genomes]
rs10831113	0.92[ASN][1000 genomes]
rs10831114	0.92[ASN][1000 genomes]
rs10831115	0.92[ASN][1000 genomes]
rs10831116	0.92[ASN][1000 genomes]
rs10831117	0.92[ASN][1000 genomes]
rs10831119	0.92[ASN][1000 genomes]
rs10831120	0.92[ASN][1000 genomes]
rs10831121	0.92[ASN][1000 genomes]
rs10831122	0.92[ASN][1000 genomes]
rs10831123	0.92[ASN][1000 genomes]
rs11020471	1.00[MEX][hapmap]
rs11020474	1.00[MEX][hapmap]
rs11020543	0.92[AFR][1000 genomes]
rs11020544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020551	0.92[ASN][1000 genomes]
rs11020553	0.92[ASN][1000 genomes]
rs11020554	0.92[ASN][1000 genomes]
rs11020556	0.92[ASN][1000 genomes]
rs11020557	0.92[ASN][1000 genomes]
rs11020558	0.92[ASN][1000 genomes]
rs11020559	0.92[ASN][1000 genomes]
rs11020560	0.92[ASN][1000 genomes]
rs11020561	0.88[ASN][1000 genomes]
rs11020562	0.88[ASN][1000 genomes]
rs11020563	0.91[ASN][1000 genomes]
rs11020564	0.91[ASN][1000 genomes]
rs11020565	0.91[ASN][1000 genomes]
rs11020567	0.90[ASN][1000 genomes]
rs11020568	0.88[ASN][1000 genomes]
rs11529071	0.90[ASN][1000 genomes]
rs11529072	0.87[ASN][1000 genomes]
rs11529073	0.87[ASN][1000 genomes]
rs11529074	0.90[ASN][1000 genomes]
rs11529075	0.90[ASN][1000 genomes]
rs11823708	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361848	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12362058	0.92[ASN][1000 genomes]
rs12363552	0.92[ASN][1000 genomes]
rs12797890	0.90[ASN][1000 genomes]
rs16919376	1.00[MEX][hapmap]
rs16919390	1.00[MEX][hapmap]
rs16919393	1.00[MEX][hapmap]
rs16919410	1.00[MEX][hapmap]
rs16919459	1.00[MEX][hapmap]
rs1848080	0.92[ASN][1000 genomes]
rs1848081	0.92[ASN][1000 genomes]
rs1857920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855699	0.87[ASN][1000 genomes]
rs34557976	0.90[ASN][1000 genomes]
rs35392171	0.82[ASN][1000 genomes]
rs61904774	0.90[ASN][1000 genomes]
rs61904776	0.90[ASN][1000 genomes]
rs7103189	1.00[MEX][hapmap]
rs7109799	1.00[MEX][hapmap]
rs7111141	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119915	1.00[MEX][hapmap]
rs7122414	0.92[ASN][1000 genomes]
rs7122431	0.92[ASN][1000 genomes]
rs7129465	0.92[ASN][1000 genomes]
rs7925205	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919548	0.92[ASN][1000 genomes]
rs9919585	0.92[ASN][1000 genomes]
rs9919626	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93584200-93588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:93584200-93590600	Weak transcription	Fetal Brain Male	brain
5	chr11:93584400-93590600	Weak transcription	Aorta	Aorta
6	chr11:93585600-93586800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:93586400-93589600	Weak transcription	H9 Cell Line	embryonic stem cell

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