Variant report

Variant	rs16919393
Chromosome Location	chr11:93547883-93547884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93546425..93547952-chr11:93554566..93556691,2	K562	blood:
2	chr11:93541821..93543774-chr11:93547845..93549491,2	MCF-7	breast:
3	chr11:93540964..93543931-chr11:93544131..93548856,5	K562	blood:

Variant related genes	Relation type
ENSG00000214376	Chromatin interaction
ENSG00000042429	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10831109	1.00[MEX][hapmap]
rs11020471	1.00[MEX][hapmap]
rs11020474	1.00[MEX][hapmap]
rs16919376	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16919379	1.00[EUR][1000 genomes]
rs16919383	1.00[EUR][1000 genomes]
rs16919384	1.00[EUR][1000 genomes]
rs16919386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919387	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919390	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919410	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16919459	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2212995	1.00[EUR][1000 genomes]
rs2226872	1.00[EUR][1000 genomes]
rs2434983	1.00[TSI][hapmap]
rs34028557	1.00[EUR][1000 genomes]
rs34298528	1.00[EUR][1000 genomes]
rs34298809	1.00[EUR][1000 genomes]
rs34631197	1.00[EUR][1000 genomes]
rs35454774	1.00[EUR][1000 genomes]
rs35642511	1.00[EUR][1000 genomes]
rs35646601	1.00[EUR][1000 genomes]
rs4284369	1.00[TSI][hapmap]
rs4372406	1.00[EUR][1000 genomes]
rs56893874	1.00[EUR][1000 genomes]
rs57340156	1.00[EUR][1000 genomes]
rs592526	1.00[TSI][hapmap]
rs607826	1.00[TSI][hapmap]
rs61628694	1.00[EUR][1000 genomes]
rs657177	1.00[TSI][hapmap]
rs7103189	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108692	1.00[EUR][1000 genomes]
rs7109799	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7112202	1.00[EUR][1000 genomes]
rs7112720	1.00[EUR][1000 genomes]
rs7112990	1.00[EUR][1000 genomes]
rs7119915	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7120747	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943111	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93520200-93549400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:93520200-93551000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:93520400-93549200	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:93520400-93549400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:93520600-93548200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:93520600-93551000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:93520800-93549000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:93520800-93549200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:93520800-93549200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:93520800-93549400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:93520800-93549400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:93520800-93549400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:93521000-93548600	Strong transcription	NH-A	brain
14	chr11:93521000-93549200	Strong transcription	Fetal Thymus	thymus
15	chr11:93521000-93549600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr11:93521000-93549600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:93521000-93550800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:93521200-93548800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:93521200-93549200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:93521200-93549200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:93521200-93549200	Strong transcription	Fetal Intestine Large	intestine
22	chr11:93521200-93549200	Strong transcription	Placenta	Placenta
23	chr11:93521200-93549200	Strong transcription	HUVEC	blood vessel
24	chr11:93521200-93549400	Strong transcription	Primary B cells from cord blood	blood
25	chr11:93521200-93549800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:93521400-93549000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:93521400-93549400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:93521400-93549400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:93521400-93549400	Strong transcription	Liver	Liver
30	chr11:93521400-93549400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:93521400-93549600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:93521400-93551200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:93521600-93549400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:93521800-93548000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:93521800-93551000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr11:93522000-93549200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:93522200-93548000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:93522200-93549400	Strong transcription	Primary T cells from cord blood	blood
39	chr11:93522400-93549000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:93522400-93549200	Strong transcription	GM12878-XiMat	blood
41	chr11:93522800-93548400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:93522800-93549200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:93523000-93548600	Strong transcription	Dnd41	blood
44	chr11:93523000-93549200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:93523200-93548400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:93524000-93549200	Strong transcription	Brain Germinal Matrix	brain
47	chr11:93525400-93549600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:93530000-93548000	Weak transcription	Psoas Muscle	Psoas
49	chr11:93530800-93549400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:93531200-93550400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links