Variant report
Variant | rs7942219 |
---|---|
Chromosome Location | chr11:113371099-113371100 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10789945 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10891556 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10891561 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10891562 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10891563 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10891565 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs11214618 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11214620 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11214621 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11214635 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2002228 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2002229 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4447205 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4548655 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7479729 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv556444 | chr11:113234432-113383394 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |