Variant report
Variant | rs11214618 |
---|---|
Chromosome Location | chr11:113353599-113353600 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
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rs_ID | r2[population] |
---|---|
rs10789943 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs10789944 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10789945 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10891550 | 0.83[AMR][1000 genomes] |
rs10891551 | 0.84[AMR][1000 genomes] |
rs10891556 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10891561 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10891562 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10891563 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10891565 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11214611 | 0.84[AMR][1000 genomes] |
rs11214620 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11214621 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11214635 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2002228 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2002229 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4245149 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4350392 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4447205 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4548655 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4648317 | 0.84[AMR][1000 genomes] |
rs4938019 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7117915 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7122454 | 0.83[AMR][1000 genomes] |
rs7479729 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv556444 | chr11:113234432-113383394 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:113351000-113363800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |