Variant report

Variant	rs10891556
Chromosome Location	chr11:113352761-113352762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:113347836..113349969-chr11:113352213..113354786,2	MCF-7	breast:
2	chr11:113346625..113349262-chr11:113351811..113353655,2	K562	blood:
3	chr11:113347762..113349968-chr11:113351400..113353311,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789943	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10789944	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10789945	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10891550	0.83[AMR][1000 genomes]
rs10891551	0.87[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]
rs10891552	0.82[CHD][hapmap]
rs10891561	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10891562	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10891563	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10891565	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11214611	0.81[ASW][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes]
rs11214618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11214620	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11214621	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11214635	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2002228	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2002229	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4245149	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4350392	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4447205	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4548655	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4648317	0.81[ASW][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes]
rs4938019	0.82[CHD][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7117915	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7122454	0.87[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs7479729	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10891556	RBM7	cis	cerebellum	SCAN
rs10891556	CRYAB	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113351000-113363800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:113351600-113352800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:113351800-113352800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:113351800-113352800	Enhancers	Brain Substantia Nigra	brain
5	chr11:113352000-113352800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:113352400-113352800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr11:113352400-113352800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links