Variant report

Variant	rs7951817
Chromosome Location	chr11:93301388-93301389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93301251..93304187-chr11:93305527..93308130,2	K562	blood:
2	chr11:93296559..93298205-chr11:93298979..93301756,2	K562	blood:
3	chr11:93298565..93302751-chr11:93303785..93308130,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10831059	0.88[ASN][1000 genomes]
rs11820018	0.81[ASN][1000 genomes]
rs11826043	0.81[ASN][1000 genomes]
rs11828934	0.81[ASN][1000 genomes]
rs16919077	0.81[ASN][1000 genomes]
rs16919082	0.81[ASN][1000 genomes]
rs2288505	0.82[JPT][hapmap]
rs2298706	0.82[JPT][hapmap]
rs2298707	0.82[JPT][hapmap]
rs3737461	0.82[JPT][hapmap]
rs3750951	1.00[CHB][hapmap]
rs3802770	0.82[JPT][hapmap]
rs3802771	0.82[JPT][hapmap]
rs3802773	0.82[JPT][hapmap]
rs3802774	0.82[JPT][hapmap]
rs3802775	0.82[JPT][hapmap]
rs3819173	0.82[JPT][hapmap]
rs6483253	0.88[ASN][1000 genomes]
rs7924747	1.00[ASN][1000 genomes]
rs7927879	1.00[AMR][1000 genomes]
rs7939341	1.00[AMR][1000 genomes]
rs7940978	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7950130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93298400-93302800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:93300200-93301400	Enhancers	Stomach Mucosa	stomach
3	chr11:93300200-93305200	Enhancers	Liver	Liver
4	chr11:93300400-93301400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:93300400-93301400	Enhancers	Adipose Nuclei	Adipose
6	chr11:93300400-93301400	Enhancers	Hela-S3	cervix
7	chr11:93300400-93301600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:93300400-93301600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:93300600-93301400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:93300600-93301400	Enhancers	Colon Smooth Muscle	Colon
11	chr11:93300600-93301400	Enhancers	Fetal Muscle Leg	muscle
12	chr11:93300600-93301400	Enhancers	Fetal Stomach	stomach
13	chr11:93300600-93301400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:93300600-93301600	Enhancers	Psoas Muscle	Psoas
15	chr11:93300800-93301400	Enhancers	Small Intestine	intestine
16	chr11:93300800-93303000	Weak transcription	HepG2	liver
17	chr11:93300800-93305000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:93301000-93303400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:93301000-93303800	Weak transcription	HSMM	muscle
20	chr11:93301000-93304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:93301000-93306400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:93301200-93302800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:93301200-93302800	Weak transcription	A549	lung
24	chr11:93301200-93303000	Weak transcription	Fetal Intestine Large	intestine
25	chr11:93301200-93303600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:93301200-93303800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:93301200-93303800	Weak transcription	Aorta	Aorta
28	chr11:93301200-93303800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:93301200-93304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:93301200-93304000	Weak transcription	Pancreas	Pancrea
31	chr11:93301200-93304000	Weak transcription	Rectal Smooth Muscle	rectum

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