Variant report

Variant	rs3802774
Chromosome Location	chr11:93432454-93432455
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93431256..93433369-chr11:93468938..93470943,2	K562	blood:
2	chr11:93418746..93421046-chr11:93432276..93434220,2	K562	blood:
3	chr11:93429389..93432729-chr11:93472370..93474745,3	K562	blood:
4	chr11:93426559..93430443-chr11:93430901..93434994,4	K562	blood:

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10741471	1.00[CHB][hapmap]
rs10765628	1.00[CHB][hapmap]
rs10831085	1.00[CHB][hapmap]
rs11020477	1.00[CHB][hapmap]
rs11020493	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12278291	1.00[CHB][hapmap]
rs12279657	1.00[CHB][hapmap]
rs12293939	0.86[CHB][hapmap]
rs16919267	1.00[ASN][1000 genomes]
rs17174449	1.00[ASN][1000 genomes]
rs1784203	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1944100	1.00[CHB][hapmap]
rs1944101	1.00[CHB][hapmap]
rs1954994	1.00[CHB][hapmap]
rs2155245	0.87[ASN][1000 genomes]
rs2155246	1.00[CHB][hapmap]
rs2155248	0.87[ASN][1000 genomes]
rs2186686	1.00[CHB][hapmap]
rs2276311	0.85[JPT][hapmap]
rs2288505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2298706	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2298707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2434986	0.83[ASN][1000 genomes]
rs2509840	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3737461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3802770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3802771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3802773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3802775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3819173	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4303196	0.87[ASN][1000 genomes]
rs4753097	1.00[CHB][hapmap]
rs4753488	1.00[CHB][hapmap]
rs59220317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60264207	1.00[ASN][1000 genomes]
rs623510	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs630648	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs631116	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs643924	0.87[ASN][1000 genomes]
rs648162	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7115167	1.00[ASN][1000 genomes]
rs7129028	1.00[ASN][1000 genomes]
rs7926876	1.00[CHB][hapmap]
rs7929351	1.00[ASN][1000 genomes]
rs7930519	1.00[CHB][hapmap]
rs7937088	0.97[ASN][1000 genomes]
rs7937523	1.00[CHB][hapmap]
rs7949850	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7951514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93398800-93440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:93398800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:93398800-93443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:93399200-93439800	Strong transcription	Dnd41	blood
8	chr11:93399800-93442200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:93400400-93443200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:93400400-93445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:93410000-93444000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:93410200-93441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:93411600-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:93411600-93442400	Strong transcription	Fetal Intestine Large	intestine
15	chr11:93412200-93434600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr11:93413800-93434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:93415600-93438200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:93415600-93441400	Strong transcription	Liver	Liver
19	chr11:93415800-93438000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr11:93415800-93442000	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr11:93416000-93440400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:93419800-93442400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:93420600-93441200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:93420800-93441400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:93420800-93444000	Strong transcription	Fetal Thymus	thymus
26	chr11:93421000-93433400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:93421200-93434200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:93421600-93432800	Strong transcription	Brain Anterior Caudate	brain
29	chr11:93421600-93442000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:93422600-93436200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:93422600-93440600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:93422800-93436400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr11:93422800-93436400	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:93422800-93437400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:93423600-93433600	Weak transcription	Fetal Intestine Small	intestine
36	chr11:93423600-93442000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:93423600-93450200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:93424000-93442600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:93424600-93434600	Strong transcription	HUVEC	blood vessel
40	chr11:93424800-93434400	Strong transcription	Placenta	Placenta
41	chr11:93424800-93440400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:93425000-93433200	Strong transcription	Left Ventricle	heart
43	chr11:93425600-93433800	Strong transcription	Ovary	ovary
44	chr11:93425600-93438000	Strong transcription	Fetal Muscle Leg	muscle
45	chr11:93426800-93433400	Strong transcription	NHEK	skin
46	chr11:93426800-93443200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:93426800-93444600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:93427000-93434600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:93427000-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:93427000-93442600	Strong transcription	Duodenum Mucosa	Duodenum

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