Variant report

Variant	rs7115167
Chromosome Location	chr11:93453474-93453475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:93453439-93453702	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93451779..93453500-chr11:93464766..93467627,2	MCF-7	breast:

Variant related genes	Relation type
KIAA1731	TF binding region
SCARNA9	TF binding region
ENSG00000206834	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000207304	Chromatin interaction
ENSG00000207145	Chromatin interaction
ENSG00000221170	Chromatin interaction
ENSG00000239195	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11020493	0.87[ASN][1000 genomes]
rs16919267	1.00[ASN][1000 genomes]
rs17174449	1.00[ASN][1000 genomes]
rs1784203	0.87[ASN][1000 genomes]
rs2155245	0.87[ASN][1000 genomes]
rs2155248	0.87[ASN][1000 genomes]
rs2288505	1.00[ASN][1000 genomes]
rs2298706	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2298707	1.00[ASN][1000 genomes]
rs2434986	0.83[ASN][1000 genomes]
rs2509840	0.87[ASN][1000 genomes]
rs3737461	1.00[ASN][1000 genomes]
rs3802770	1.00[ASN][1000 genomes]
rs3802771	1.00[ASN][1000 genomes]
rs3802773	1.00[ASN][1000 genomes]
rs3802774	1.00[ASN][1000 genomes]
rs3802775	1.00[ASN][1000 genomes]
rs3819173	1.00[ASN][1000 genomes]
rs4303196	0.87[ASN][1000 genomes]
rs59220317	1.00[ASN][1000 genomes]
rs60264207	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs623510	0.87[ASN][1000 genomes]
rs630648	0.87[ASN][1000 genomes]
rs631116	0.87[ASN][1000 genomes]
rs643924	0.87[ASN][1000 genomes]
rs648162	0.87[ASN][1000 genomes]
rs7129028	1.00[ASN][1000 genomes]
rs7929351	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7937088	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7951514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	esv3382440	chr11:93453185-93453705	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
2	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach
3	chr11:93436000-93454600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:93440200-93460000	Weak transcription	NHLF	lung
5	chr11:93441600-93461200	Weak transcription	HSMMtube	muscle
6	chr11:93442000-93463200	Weak transcription	Colonic Mucosa	Colon
7	chr11:93442200-93454200	Weak transcription	NH-A	brain
8	chr11:93442800-93460000	Weak transcription	Fetal Brain Male	brain
9	chr11:93443600-93454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:93443600-93460200	Weak transcription	NHDF-Ad	bronchial
11	chr11:93444000-93454400	Weak transcription	A549	lung
12	chr11:93444000-93454400	Weak transcription	HMEC	breast
13	chr11:93444000-93455200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:93444000-93466400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:93444200-93454400	Weak transcription	Fetal Heart	heart
16	chr11:93444200-93462200	Weak transcription	Psoas Muscle	Psoas
17	chr11:93444800-93471000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:93445400-93458600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:93445400-93465200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:93445800-93454400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:93446200-93454800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:93447200-93459800	Strong transcription	Fetal Stomach	stomach
23	chr11:93447600-93457800	Strong transcription	Liver	Liver
24	chr11:93447600-93468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:93448000-93460000	Strong transcription	Fetal Intestine Small	intestine
26	chr11:93448000-93465600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:93448600-93461400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:93448600-93465400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:93449000-93462200	Weak transcription	Small Intestine	intestine
30	chr11:93449200-93462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:93449200-93471800	Weak transcription	Right Atrium	heart
32	chr11:93449400-93454400	Weak transcription	Fetal Kidney	kidney
33	chr11:93449400-93455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:93449400-93455600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:93449400-93458800	Weak transcription	Brain Substantia Nigra	brain
36	chr11:93449400-93461600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:93449400-93463800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr11:93449400-93465400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:93449600-93455000	Weak transcription	Brain Anterior Caudate	brain
40	chr11:93449600-93457400	Weak transcription	Fetal Brain Female	brain
41	chr11:93449600-93462200	Weak transcription	Spleen	Spleen
42	chr11:93449600-93462400	Weak transcription	Right Ventricle	heart
43	chr11:93449600-93471800	Weak transcription	Esophagus	oesophagus
44	chr11:93450000-93454400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:93450000-93454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:93450000-93455200	Weak transcription	Left Ventricle	heart
47	chr11:93450000-93458800	Weak transcription	Lung	lung
48	chr11:93450000-93459400	Weak transcription	Aorta	Aorta
49	chr11:93450000-93462200	Weak transcription	Pancreas	Pancrea
50	chr11:93450200-93454600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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