Variant report

Variant	rs643924
Chromosome Location	chr11:93448589-93448590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1011993	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10734163	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741470	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741471	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741472	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741473	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765621	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765622	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765624	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765625	0.88[AMR][1000 genomes]
rs10765626	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10765627	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765628	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10765629	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765631	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831085	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10831086	1.00[EUR][1000 genomes]
rs10831088	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831092	0.82[AMR][1000 genomes]
rs11020477	0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11020493	1.00[ASN][1000 genomes]
rs12277621	0.82[ASN][1000 genomes]
rs12278291	0.82[ASN][1000 genomes]
rs12279657	0.82[ASN][1000 genomes]
rs12293939	0.82[ASN][1000 genomes]
rs16919267	0.87[ASN][1000 genomes]
rs17174449	0.87[ASN][1000 genomes]
rs1784203	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944099	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944100	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1944101	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1944102	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944103	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944105	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1944106	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1954994	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155245	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2155246	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155248	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186686	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2288505	0.87[ASN][1000 genomes]
rs2298706	0.87[ASN][1000 genomes]
rs2298707	0.87[ASN][1000 genomes]
rs2434986	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2509840	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737461	0.87[ASN][1000 genomes]
rs3802770	0.87[ASN][1000 genomes]
rs3802771	0.87[ASN][1000 genomes]
rs3802773	0.87[ASN][1000 genomes]
rs3802774	0.87[ASN][1000 genomes]
rs3802775	0.87[ASN][1000 genomes]
rs3819173	0.87[ASN][1000 genomes]
rs4237560	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4303195	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4303196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753095	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753096	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753097	0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4753098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753099	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4753101	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4753488	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4753489	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753491	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753492	0.82[AMR][1000 genomes]
rs4753495	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586655	0.82[AMR][1000 genomes]
rs59220317	0.87[ASN][1000 genomes]
rs60224981	0.82[ASN][1000 genomes]
rs60264207	0.87[ASN][1000 genomes]
rs60410024	0.82[ASN][1000 genomes]
rs61918554	0.82[ASN][1000 genomes]
rs623510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628916	1.00[EUR][1000 genomes]
rs630648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642984	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs648162	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655279	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101779	0.82[AMR][1000 genomes]
rs7115167	0.87[ASN][1000 genomes]
rs7121150	1.00[EUR][1000 genomes]
rs7127033	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129028	0.87[ASN][1000 genomes]
rs7130267	0.82[ASN][1000 genomes]
rs7926876	0.88[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7929351	0.87[ASN][1000 genomes]
rs7930519	0.82[ASN][1000 genomes]
rs7937088	0.84[ASN][1000 genomes]
rs7937523	0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7939834	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940153	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949850	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951514	0.87[ASN][1000 genomes]
rs7952443	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93423600-93450200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
3	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach
4	chr11:93431400-93450400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:93436000-93454600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:93440200-93460000	Weak transcription	NHLF	lung
7	chr11:93441600-93449000	Weak transcription	Pancreas	Pancrea
8	chr11:93441600-93461200	Weak transcription	HSMMtube	muscle
9	chr11:93441800-93450600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:93442000-93449800	Weak transcription	HSMM	muscle
11	chr11:93442000-93450800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:93442000-93463200	Weak transcription	Colonic Mucosa	Colon
13	chr11:93442200-93449000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:93442200-93449000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:93442200-93454200	Weak transcription	NH-A	brain
16	chr11:93442600-93449000	Weak transcription	Left Ventricle	heart
17	chr11:93442600-93450800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:93442800-93460000	Weak transcription	Fetal Brain Male	brain
19	chr11:93443400-93448600	Weak transcription	HUVEC	blood vessel
20	chr11:93443400-93451000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:93443600-93450000	Weak transcription	NHEK	skin
22	chr11:93443600-93450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:93443600-93451000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:93443600-93454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:93443600-93460200	Weak transcription	NHDF-Ad	bronchial
26	chr11:93444000-93448600	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:93444000-93448800	Weak transcription	Osteobl	bone
28	chr11:93444000-93450400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:93444000-93454400	Weak transcription	A549	lung
30	chr11:93444000-93454400	Weak transcription	HMEC	breast
31	chr11:93444000-93455200	Weak transcription	Brain Angular Gyrus	brain
32	chr11:93444000-93466400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:93444200-93450200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:93444200-93450400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:93444200-93454400	Weak transcription	Fetal Heart	heart
36	chr11:93444200-93462200	Weak transcription	Psoas Muscle	Psoas
37	chr11:93444400-93451200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:93444600-93448600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:93444800-93471000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:93445000-93449200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr11:93445400-93458600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:93445400-93465200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:93445800-93448600	Weak transcription	Primary B cells from cord blood	blood
44	chr11:93445800-93454400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:93446200-93448600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:93446200-93454800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:93446600-93449800	Strong transcription	Primary T cells from cord blood	blood
48	chr11:93446600-93450000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:93446800-93450800	Strong transcription	Fetal Thymus	thymus
50	chr11:93446800-93451200	Genic enhancers	K562	blood

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