Variant report

Variant	rs10831092
Chromosome Location	chr11:93419395-93419396
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93418083..93421940-chr11:93461285..93464407,3	K562	blood:
2	chr11:93418746..93421046-chr11:93432276..93434220,2	K562	blood:

Variant related genes	Relation type
ENSG00000206799	Chromatin interaction
ENSG00000207112	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10047479	1.00[ASN][1000 genomes]
rs10047481	1.00[ASN][1000 genomes]
rs10047484	1.00[ASN][1000 genomes]
rs1011993	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10128669	1.00[ASN][1000 genomes]
rs10128673	1.00[ASN][1000 genomes]
rs10128725	1.00[ASN][1000 genomes]
rs10128726	1.00[ASN][1000 genomes]
rs10734163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10741471	0.82[AMR][1000 genomes]
rs10741472	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10741473	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10765621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10765622	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10765624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10765625	0.82[AMR][1000 genomes]
rs10765626	0.82[AMR][1000 genomes]
rs10765627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10765628	0.82[AMR][1000 genomes]
rs10765629	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10765631	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10831085	0.82[AMR][1000 genomes]
rs10831086	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10831088	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020467	1.00[ASN][1000 genomes]
rs11020468	1.00[ASN][1000 genomes]
rs11020469	1.00[ASN][1000 genomes]
rs11020471	1.00[ASN][1000 genomes]
rs11020474	1.00[ASN][1000 genomes]
rs11020477	0.82[AMR][1000 genomes]
rs11822965	1.00[ASN][1000 genomes]
rs11828991	1.00[ASN][1000 genomes]
rs12271543	1.00[ASN][1000 genomes]
rs12272963	1.00[ASN][1000 genomes]
rs12274112	1.00[ASN][1000 genomes]
rs12275974	1.00[ASN][1000 genomes]
rs12277268	1.00[ASN][1000 genomes]
rs12278092	1.00[ASN][1000 genomes]
rs12284176	1.00[ASN][1000 genomes]
rs12295009	1.00[ASN][1000 genomes]
rs13377252	1.00[ASN][1000 genomes]
rs13377541	1.00[ASN][1000 genomes]
rs16919124	1.00[ASN][1000 genomes]
rs1784203	0.82[AMR][1000 genomes]
rs1944099	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944100	0.82[AMR][1000 genomes]
rs1944101	0.82[AMR][1000 genomes]
rs1944102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1944105	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1944106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1954994	0.82[AMR][1000 genomes]
rs2155245	0.82[AMR][1000 genomes]
rs2155246	0.82[AMR][1000 genomes]
rs2155248	0.82[AMR][1000 genomes]
rs2186686	0.82[AMR][1000 genomes]
rs2509840	0.82[AMR][1000 genomes]
rs4237560	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4303195	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4303196	0.82[AMR][1000 genomes]
rs4753095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4753096	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4753097	0.82[AMR][1000 genomes]
rs4753098	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753099	0.82[AMR][1000 genomes]
rs4753488	0.82[AMR][1000 genomes]
rs4753489	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4753490	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4753491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4753492	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753493	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4753495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56705833	1.00[ASN][1000 genomes]
rs58111338	1.00[ASN][1000 genomes]
rs586655	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61904920	1.00[ASN][1000 genomes]
rs61904941	1.00[ASN][1000 genomes]
rs61904951	1.00[ASN][1000 genomes]
rs61904958	1.00[ASN][1000 genomes]
rs61906560	1.00[ASN][1000 genomes]
rs61918547	1.00[ASN][1000 genomes]
rs61918549	1.00[ASN][1000 genomes]
rs61918550	1.00[ASN][1000 genomes]
rs61918551	1.00[ASN][1000 genomes]
rs61918553	1.00[ASN][1000 genomes]
rs61918555	1.00[ASN][1000 genomes]
rs61918556	1.00[ASN][1000 genomes]
rs61918557	1.00[ASN][1000 genomes]
rs61918558	1.00[ASN][1000 genomes]
rs61921277	1.00[ASN][1000 genomes]
rs623510	1.00[AMR][1000 genomes]
rs628916	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs629580	1.00[ASN][1000 genomes]
rs630648	1.00[AMR][1000 genomes]
rs631116	1.00[AMR][1000 genomes]
rs642984	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs643924	0.82[AMR][1000 genomes]
rs648162	0.82[AMR][1000 genomes]
rs655279	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs674150	1.00[ASN][1000 genomes]
rs688374	0.83[ASN][1000 genomes]
rs7101779	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111581	1.00[ASN][1000 genomes]
rs7113200	1.00[ASN][1000 genomes]
rs7127033	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7926876	0.82[AMR][1000 genomes]
rs7937523	0.82[AMR][1000 genomes]
rs7939834	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7939847	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7940153	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7941230	1.00[ASN][1000 genomes]
rs7949850	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93398000-93426200	Strong transcription	Hela-S3	cervix
5	chr11:93398600-93426000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:93398800-93440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:93398800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:93398800-93443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:93399000-93426200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:93399000-93426200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:93399200-93439800	Strong transcription	Dnd41	blood
12	chr11:93399800-93422200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:93399800-93422400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:93399800-93442200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:93400400-93443200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:93400400-93445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:93401000-93423400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:93408800-93422200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr11:93409800-93423400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:93410000-93444000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr11:93410200-93441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:93411600-93420400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:93411600-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:93411600-93442400	Strong transcription	Fetal Intestine Large	intestine
25	chr11:93411800-93419400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:93411800-93419400	Strong transcription	Left Ventricle	heart
27	chr11:93412000-93426200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:93412200-93434600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:93413800-93421800	Weak transcription	Lung	lung
30	chr11:93413800-93422200	Weak transcription	Colonic Mucosa	Colon
31	chr11:93413800-93430400	Weak transcription	Aorta	Aorta
32	chr11:93413800-93430400	Weak transcription	Esophagus	oesophagus
33	chr11:93413800-93430400	Weak transcription	Pancreas	Pancrea
34	chr11:93413800-93434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:93414000-93430000	Weak transcription	Spleen	Spleen
36	chr11:93415600-93419800	Strong transcription	NHEK	skin
37	chr11:93415600-93420400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr11:93415600-93438200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:93415600-93441400	Strong transcription	Liver	Liver
40	chr11:93415800-93419600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:93415800-93419800	Strong transcription	HSMM	muscle
42	chr11:93415800-93420000	Strong transcription	K562	blood
43	chr11:93415800-93421400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:93415800-93422800	Strong transcription	Fetal Lung	lung
45	chr11:93415800-93423400	Strong transcription	Brain Germinal Matrix	brain
46	chr11:93415800-93423400	Strong transcription	GM12878-XiMat	blood
47	chr11:93415800-93423800	Strong transcription	Primary T cells from cord blood	blood
48	chr11:93415800-93426000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:93415800-93438000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr11:93415800-93442000	Strong transcription	H1 Cell Line	embryonic stem cell

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