Variant report

Variant	rs7941230
Chromosome Location	chr11:93375437-93375438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93373748..93375964-chr11:93381168..93383462,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10047479	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10047481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10047484	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1011008	0.89[AMR][1000 genomes]
rs1011993	1.00[ASN][1000 genomes]
rs10128669	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10128673	1.00[ASN][1000 genomes]
rs10128725	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10128726	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10734163	1.00[ASN][1000 genomes]
rs10741472	1.00[ASN][1000 genomes]
rs10741473	1.00[ASN][1000 genomes]
rs10765621	1.00[ASN][1000 genomes]
rs10765622	1.00[ASN][1000 genomes]
rs10765624	1.00[ASN][1000 genomes]
rs10765627	1.00[ASN][1000 genomes]
rs10765629	0.83[ASN][1000 genomes]
rs10765631	1.00[ASN][1000 genomes]
rs10831086	1.00[ASN][1000 genomes]
rs10831088	1.00[ASN][1000 genomes]
rs10831092	1.00[ASN][1000 genomes]
rs11020448	0.89[AMR][1000 genomes]
rs11020467	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020468	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020469	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020471	1.00[ASN][1000 genomes]
rs11020474	1.00[ASN][1000 genomes]
rs11822965	1.00[ASN][1000 genomes]
rs11828991	1.00[ASN][1000 genomes]
rs12271543	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12272963	1.00[ASN][1000 genomes]
rs12274112	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275974	1.00[ASN][1000 genomes]
rs12276266	0.89[AMR][1000 genomes]
rs12277268	1.00[ASN][1000 genomes]
rs12277621	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12278092	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278291	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12279634	0.89[AMR][1000 genomes]
rs12279657	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12283126	0.89[AMR][1000 genomes]
rs12284176	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12291408	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12293939	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12295009	1.00[ASN][1000 genomes]
rs13377252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13377541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16919124	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944099	1.00[ASN][1000 genomes]
rs1944102	1.00[ASN][1000 genomes]
rs1944106	1.00[ASN][1000 genomes]
rs4237560	1.00[ASN][1000 genomes]
rs4303195	1.00[ASN][1000 genomes]
rs4753095	1.00[ASN][1000 genomes]
rs4753096	1.00[ASN][1000 genomes]
rs4753489	1.00[ASN][1000 genomes]
rs4753490	1.00[ASN][1000 genomes]
rs4753491	1.00[ASN][1000 genomes]
rs4753495	0.83[ASN][1000 genomes]
rs56705833	1.00[ASN][1000 genomes]
rs58111338	1.00[ASN][1000 genomes]
rs58454195	1.00[AFR][1000 genomes]
rs586655	1.00[ASN][1000 genomes]
rs60224981	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60410024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61904920	1.00[ASN][1000 genomes]
rs61904941	1.00[ASN][1000 genomes]
rs61904951	1.00[ASN][1000 genomes]
rs61904958	1.00[ASN][1000 genomes]
rs61906560	1.00[ASN][1000 genomes]
rs61918547	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918549	1.00[ASN][1000 genomes]
rs61918550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918551	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918553	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918554	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61918555	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918556	1.00[ASN][1000 genomes]
rs61918557	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918558	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61921277	1.00[ASN][1000 genomes]
rs628916	1.00[ASN][1000 genomes]
rs629580	1.00[ASN][1000 genomes]
rs642984	1.00[ASN][1000 genomes]
rs655279	1.00[ASN][1000 genomes]
rs674150	1.00[ASN][1000 genomes]
rs688374	0.83[ASN][1000 genomes]
rs7101779	1.00[ASN][1000 genomes]
rs7111581	1.00[ASN][1000 genomes]
rs7113200	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7127033	1.00[ASN][1000 genomes]
rs7130267	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7930519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939834	1.00[ASN][1000 genomes]
rs7939847	1.00[ASN][1000 genomes]
rs7940153	1.00[ASN][1000 genomes]
rs7952443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93371600-93375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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