Variant report

Variant	rs12279634
Chromosome Location	chr11:93357882-93357883
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93356197..93359571-chr11:93360394..93364299,4	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10047479	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020438	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020468	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020469	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822965	1.00[EUR][1000 genomes]
rs11828991	1.00[EUR][1000 genomes]
rs12271543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277621	1.00[AMR][1000 genomes]
rs12278092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377541	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56705833	1.00[EUR][1000 genomes]
rs58111338	1.00[EUR][1000 genomes]
rs60224981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes]
rs61904941	1.00[EUR][1000 genomes]
rs61904958	1.00[EUR][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918549	1.00[EUR][1000 genomes]
rs61918550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	1.00[AMR][1000 genomes]
rs61918557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61921277	1.00[EUR][1000 genomes]
rs674150	1.00[EUR][1000 genomes]
rs7109091	0.89[AMR][1000 genomes]
rs7109215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111581	1.00[EUR][1000 genomes]
rs7113200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941230	0.89[AMR][1000 genomes]
rs7952443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93355400-93359200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:93355600-93358800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:93355800-93358400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:93355800-93358400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:93355800-93358400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:93356000-93358000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:93356000-93359000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:93356000-93359200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:93356200-93358800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:93356200-93358800	Enhancers	HepG2	liver
11	chr11:93356400-93358400	Enhancers	Fetal Lung	lung
12	chr11:93356400-93358600	Enhancers	Fetal Intestine Large	intestine
13	chr11:93356400-93358800	Enhancers	Fetal Intestine Small	intestine
14	chr11:93356600-93359600	Enhancers	Fetal Brain Male	brain
15	chr11:93356600-93364600	Weak transcription	Pancreas	Pancrea
16	chr11:93356800-93358000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:93357000-93358200	Enhancers	Gastric	stomach
18	chr11:93357000-93358800	Enhancers	Fetal Brain Female	brain
19	chr11:93357200-93358200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:93357400-93358000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:93357400-93358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:93357800-93358000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr11:93357800-93358000	Enhancers	HSMMtube	muscle
24	chr11:93357800-93358200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:93357800-93358200	Bivalent Enhancer	HSMM	muscle

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