Variant report

Variant	rs674150
Chromosome Location	chr11:93568902-93568903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10047479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011993	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10128669	1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128673	1.00[ASN][1000 genomes]
rs10128725	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128726	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501805	1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10734163	1.00[ASN][1000 genomes]
rs10741471	1.00[CEU][hapmap]
rs10741472	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10741473	1.00[ASN][1000 genomes]
rs10765621	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765622	1.00[ASN][1000 genomes]
rs10765624	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765627	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765628	1.00[CEU][hapmap]
rs10765629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10765631	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831085	1.00[CEU][hapmap]
rs10831086	1.00[ASN][1000 genomes]
rs10831088	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831092	1.00[ASN][1000 genomes]
rs11020467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020468	1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020469	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020471	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020474	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020477	1.00[CEU][hapmap]
rs11020493	1.00[CEU][hapmap]
rs11822965	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271543	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272963	1.00[ASN][1000 genomes]
rs12274112	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275974	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12276266	1.00[EUR][1000 genomes]
rs12277268	1.00[ASN][1000 genomes]
rs12278092	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278291	1.00[EUR][1000 genomes]
rs12279634	1.00[EUR][1000 genomes]
rs12279657	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12284176	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291408	1.00[EUR][1000 genomes]
rs12293939	1.00[EUR][1000 genomes]
rs12295009	1.00[ASN][1000 genomes]
rs13377252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377541	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919124	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784203	1.00[CEU][hapmap]
rs1944099	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944100	1.00[CEU][hapmap]
rs1944101	1.00[CEU][hapmap]
rs1944102	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944106	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1954994	1.00[CEU][hapmap]
rs2155246	1.00[CEU][hapmap]
rs2509840	1.00[CEU][hapmap]
rs4237560	1.00[ASN][1000 genomes]
rs4303195	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753095	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753096	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753098	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4753488	1.00[CEU][hapmap]
rs4753489	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753490	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753491	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753495	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs56705833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58111338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586655	1.00[ASN][1000 genomes]
rs60224981	1.00[EUR][1000 genomes]
rs60410024	1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904951	1.00[ASN][1000 genomes]
rs61904958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906560	1.00[ASN][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918554	1.00[EUR][1000 genomes]
rs61918555	1.00[ASN][1000 genomes]
rs61918556	1.00[ASN][1000 genomes]
rs61918557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918558	1.00[ASN][1000 genomes]
rs61921277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623510	1.00[CEU][hapmap]
rs628916	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs629580	1.00[ASN][1000 genomes]
rs630648	1.00[CEU][hapmap]
rs631116	1.00[CEU][hapmap]
rs642984	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs648162	1.00[CEU][hapmap]
rs655279	1.00[ASN][1000 genomes]
rs688374	0.83[ASN][1000 genomes]
rs7101779	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7111581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127033	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7130267	1.00[EUR][1000 genomes]
rs7926876	1.00[CEU][hapmap]
rs7930519	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7937523	1.00[CEU][hapmap]
rs7939834	1.00[ASN][1000 genomes]
rs7939847	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7940153	1.00[ASN][1000 genomes]
rs7941230	1.00[ASN][1000 genomes]
rs7949850	1.00[CEU][hapmap]
rs7952443	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93565000-93575200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:93565400-93570400	Weak transcription	Stomach Mucosa	stomach
3	chr11:93565400-93575400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:93567800-93575600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:93568800-93569400	Weak transcription	Spleen	Spleen

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