Variant report

Variant	rs12276266
Chromosome Location	chr11:93356754-93356755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93356197..93359571-chr11:93360394..93364299,4	K562	blood:
2	chr11:93351079..93352996-chr11:93355516..93357214,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10047479	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011008	0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020438	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020468	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020469	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822965	1.00[EUR][1000 genomes]
rs11828991	1.00[EUR][1000 genomes]
rs12271543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277621	1.00[AMR][1000 genomes]
rs12278092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377541	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56705833	1.00[EUR][1000 genomes]
rs58111338	1.00[EUR][1000 genomes]
rs60224981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes]
rs61904941	1.00[EUR][1000 genomes]
rs61904958	1.00[EUR][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918549	1.00[EUR][1000 genomes]
rs61918550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	1.00[AMR][1000 genomes]
rs61918557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61921277	1.00[EUR][1000 genomes]
rs674150	1.00[EUR][1000 genomes]
rs7109091	0.89[AMR][1000 genomes]
rs7109215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941230	0.89[AMR][1000 genomes]
rs7952443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93348000-93357800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93355400-93357400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:93355400-93357400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:93355400-93359200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:93355600-93358800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:93355800-93357200	Enhancers	GM12878-XiMat	blood
7	chr11:93355800-93357400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:93355800-93358400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:93355800-93358400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:93355800-93358400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:93356000-93357200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:93356000-93357200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:93356000-93358000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:93356000-93359000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:93356000-93359200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:93356200-93356800	Enhancers	Small Intestine	intestine
17	chr11:93356200-93358800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:93356200-93358800	Enhancers	HepG2	liver
19	chr11:93356400-93356800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:93356400-93356800	Enhancers	Gastric	stomach
21	chr11:93356400-93357000	Enhancers	Brain Germinal Matrix	brain
22	chr11:93356400-93357000	Enhancers	Colonic Mucosa	Colon
23	chr11:93356400-93357200	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:93356400-93357400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:93356400-93358400	Enhancers	Fetal Lung	lung
26	chr11:93356400-93358600	Enhancers	Fetal Intestine Large	intestine
27	chr11:93356400-93358800	Enhancers	Fetal Intestine Small	intestine
28	chr11:93356600-93359600	Enhancers	Fetal Brain Male	brain
29	chr11:93356600-93364600	Weak transcription	Pancreas	Pancrea

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