Variant report

Variant	rs12278092
Chromosome Location	chr11:93387740-93387741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93385405..93388385-chr17:41464736..41467755,3	K562	blood:
2	chr11:93386929..93389387-chr11:93393075..93395163,2	MCF-7	breast:
3	chr11:93384737..93386704-chr11:93387448..93389310,2	K562	blood:

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10047479	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047481	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047484	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011993	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10128669	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128673	1.00[ASN][1000 genomes]
rs10128725	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128726	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501805	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10734163	1.00[ASN][1000 genomes]
rs10741472	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10741473	1.00[ASN][1000 genomes]
rs10765621	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765622	1.00[ASN][1000 genomes]
rs10765624	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765629	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10765631	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831086	1.00[ASN][1000 genomes]
rs10831088	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831092	1.00[ASN][1000 genomes]
rs11020438	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020468	1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020469	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020471	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020474	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11822965	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271543	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272963	1.00[ASN][1000 genomes]
rs12274112	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275974	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12276266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277268	1.00[ASN][1000 genomes]
rs12277621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278291	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291408	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295009	1.00[ASN][1000 genomes]
rs13377252	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377541	1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919124	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944099	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944102	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944106	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4237560	1.00[ASN][1000 genomes]
rs4303195	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753095	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753096	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753098	1.00[JPT][hapmap]
rs4753489	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753490	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753491	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753495	0.83[ASN][1000 genomes]
rs56705833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58111338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454195	0.90[AFR][1000 genomes]
rs586655	1.00[ASN][1000 genomes]
rs60224981	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410024	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904951	1.00[ASN][1000 genomes]
rs61904958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906560	1.00[ASN][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918550	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918556	1.00[ASN][1000 genomes]
rs61918557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918558	1.00[ASN][1000 genomes]
rs61921277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628916	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs629580	1.00[ASN][1000 genomes]
rs642984	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs655279	1.00[ASN][1000 genomes]
rs674150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688374	0.83[ASN][1000 genomes]
rs7101779	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7109091	0.89[AMR][1000 genomes]
rs7109215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127033	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7128116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939834	1.00[ASN][1000 genomes]
rs7939847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7940153	1.00[ASN][1000 genomes]
rs7941230	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7952443	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93379000-93387800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:93379000-93388800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:93385200-93389600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:93385400-93388800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:93385800-93388400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:93386800-93388200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr11:93387400-93387800	Enhancers	Primary B cells from cord blood	blood
8	chr11:93387400-93388800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr11:93387600-93389400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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