Variant report

Variant	rs11020438
Chromosome Location	chr11:93327401-93327402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10047479	1.00[EUR][1000 genomes]
rs10047481	1.00[EUR][1000 genomes]
rs10047484	1.00[EUR][1000 genomes]
rs1011008	0.89[ASW][hapmap];0.89[LWK][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128669	1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128725	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128726	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501804	1.00[MEX][hapmap]
rs10501805	1.00[TSI][hapmap]
rs11020382	1.00[MEX][hapmap]
rs11020448	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	1.00[EUR][1000 genomes]
rs11020468	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11020469	1.00[EUR][1000 genomes]
rs12271543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274112	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276266	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277621	0.89[AMR][1000 genomes]
rs12278092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278291	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377252	1.00[EUR][1000 genomes]
rs13377541	1.00[EUR][1000 genomes]
rs16919124	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478954	0.89[ASW][hapmap]
rs58111338	1.00[EUR][1000 genomes]
rs60224981	1.00[EUR][1000 genomes]
rs60410024	1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes]
rs61904941	1.00[EUR][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	1.00[EUR][1000 genomes]
rs61918549	1.00[EUR][1000 genomes]
rs61918550	1.00[EUR][1000 genomes]
rs61918551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918553	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918554	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	0.89[AMR][1000 genomes]
rs61918557	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61921277	1.00[EUR][1000 genomes]
rs7109091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113200	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952443	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3413360	chr11:93325554-93328002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine

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