Variant report

Variant	rs60410024
Chromosome Location	chr11:93372107-93372108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93370422..93373225-chr11:93388885..93391216,2	K562	blood:
2	chr11:93372093..93374223-chr11:93472267..93473882,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10047479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011008	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128669	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128725	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128726	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741470	0.92[ASN][1000 genomes]
rs10741471	0.92[ASN][1000 genomes]
rs10765626	0.85[ASN][1000 genomes]
rs10765628	0.92[ASN][1000 genomes]
rs10831085	0.92[ASN][1000 genomes]
rs11020438	1.00[EUR][1000 genomes]
rs11020448	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020477	0.92[ASN][1000 genomes]
rs11020493	0.82[ASN][1000 genomes]
rs11822965	1.00[EUR][1000 genomes]
rs11828991	1.00[EUR][1000 genomes]
rs12271543	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274112	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276266	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277621	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278092	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278291	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919124	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1784203	0.82[ASN][1000 genomes]
rs1944100	0.92[ASN][1000 genomes]
rs1944101	0.92[ASN][1000 genomes]
rs1944105	0.88[ASN][1000 genomes]
rs1954994	0.92[ASN][1000 genomes]
rs2155245	0.82[ASN][1000 genomes]
rs2155246	0.92[ASN][1000 genomes]
rs2155248	0.82[ASN][1000 genomes]
rs2186686	0.92[ASN][1000 genomes]
rs2509840	0.82[ASN][1000 genomes]
rs4303196	0.82[ASN][1000 genomes]
rs4753097	0.92[ASN][1000 genomes]
rs4753099	0.92[ASN][1000 genomes]
rs4753101	0.83[ASN][1000 genomes]
rs4753488	0.92[ASN][1000 genomes]
rs56705833	1.00[EUR][1000 genomes]
rs58111338	1.00[EUR][1000 genomes]
rs58454195	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60224981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904920	1.00[EUR][1000 genomes]
rs61904941	1.00[EUR][1000 genomes]
rs61904958	1.00[EUR][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918549	1.00[EUR][1000 genomes]
rs61918550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918551	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918553	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918554	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918555	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61918557	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918558	0.81[AMR][1000 genomes]
rs61921277	1.00[EUR][1000 genomes]
rs623510	0.82[ASN][1000 genomes]
rs630648	0.82[ASN][1000 genomes]
rs631116	0.82[ASN][1000 genomes]
rs643924	0.82[ASN][1000 genomes]
rs648162	0.82[ASN][1000 genomes]
rs674150	1.00[EUR][1000 genomes]
rs7109215	1.00[EUR][1000 genomes]
rs7111581	1.00[EUR][1000 genomes]
rs7113200	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128116	1.00[EUR][1000 genomes]
rs7130267	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926876	0.92[ASN][1000 genomes]
rs7930519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937523	0.92[ASN][1000 genomes]
rs7941230	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949850	0.95[ASN][1000 genomes]
rs7952443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93371600-93375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:93371800-93372200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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