Variant report

Variant	rs11020469
Chromosome Location	chr11:93393213-93393214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:93393173-93393373	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:93393142..93395279-chr11:93515864..93518097,3	K562	blood:
2	chr11:93393119..93395461-chr11:93422571..93425502,2	K562	blood:
3	chr11:93393010..93396864-chr11:93472820..93475395,3	K562	blood:
4	chr11:93392460..93395279-chr11:93515167..93518670,4	K562	blood:

Variant related genes	Relation type
KIAA1731	TF binding region
ENSG00000166004	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000042429	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10047479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011008	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011993	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10128669	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128673	1.00[ASN][1000 genomes]
rs10128725	1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10128726	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501805	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10734163	1.00[ASN][1000 genomes]
rs10741472	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10741473	1.00[ASN][1000 genomes]
rs10765621	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765622	1.00[ASN][1000 genomes]
rs10765624	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10765629	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10765631	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831086	1.00[ASN][1000 genomes]
rs10831088	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10831092	1.00[ASN][1000 genomes]
rs11020438	1.00[EUR][1000 genomes]
rs11020448	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020468	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020471	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11020474	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11822965	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271543	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272963	1.00[ASN][1000 genomes]
rs12274112	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275974	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12276266	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277268	1.00[ASN][1000 genomes]
rs12277621	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12278092	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278291	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295009	1.00[ASN][1000 genomes]
rs13377252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377541	1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919124	1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944099	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944102	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1944106	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4237560	1.00[ASN][1000 genomes]
rs4303195	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753095	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753096	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753098	1.00[JPT][hapmap]
rs4753489	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753490	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753491	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4753495	0.83[ASN][1000 genomes]
rs56705833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58111338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454195	0.87[AFR][1000 genomes]
rs586655	1.00[ASN][1000 genomes]
rs60224981	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410024	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904951	1.00[ASN][1000 genomes]
rs61904958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906560	1.00[ASN][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918551	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918553	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918554	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918556	1.00[ASN][1000 genomes]
rs61918557	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918558	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61921277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628916	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs629580	1.00[ASN][1000 genomes]
rs642984	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs655279	1.00[ASN][1000 genomes]
rs674150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688374	0.83[ASN][1000 genomes]
rs7101779	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7109215	1.00[EUR][1000 genomes]
rs7111581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113200	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127033	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7128116	1.00[EUR][1000 genomes]
rs7130267	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939834	1.00[ASN][1000 genomes]
rs7939847	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7940153	1.00[ASN][1000 genomes]
rs7941230	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7952443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93389000-93393800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:93389200-93393800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:93389200-93394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:93389400-93394000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:93389400-93394000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:93389400-93394200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:93389600-93394200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:93389600-93394200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:93389600-93394200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:93389600-93394200	Weak transcription	Fetal Thymus	thymus
11	chr11:93389600-93394200	Weak transcription	Thymus	Thymus
12	chr11:93389600-93394200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:93389800-93394000	Weak transcription	Primary T cells from cord blood	blood
14	chr11:93390200-93393800	Weak transcription	Dnd41	blood
15	chr11:93391800-93394400	Weak transcription	Fetal Brain Male	brain
16	chr11:93392200-93394400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:93392400-93394400	Weak transcription	Aorta	Aorta
18	chr11:93393200-93394200	Weak transcription	Brain Anterior Caudate	brain

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