Variant report

Variant	rs11020448
Chromosome Location	chr11:93346041-93346042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10047479	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047481	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10047484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1011008	0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020438	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020468	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020469	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822965	1.00[EUR][1000 genomes]
rs11828991	1.00[EUR][1000 genomes]
rs12271543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277621	1.00[AMR][1000 genomes]
rs12278092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377541	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58111338	1.00[EUR][1000 genomes]
rs60224981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904920	1.00[EUR][1000 genomes]
rs61904941	1.00[EUR][1000 genomes]
rs61904958	1.00[EUR][1000 genomes]
rs61918530	1.00[EUR][1000 genomes]
rs61918547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918549	1.00[EUR][1000 genomes]
rs61918550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61918555	1.00[AMR][1000 genomes]
rs61918557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61921277	1.00[EUR][1000 genomes]
rs7109091	0.89[AMR][1000 genomes]
rs7109215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930519	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941230	0.89[AMR][1000 genomes]
rs7952443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93342800-93346800	Enhancers	Fetal Intestine Large	intestine
2	chr11:93343200-93346600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:93343200-93346600	Enhancers	Stomach Mucosa	stomach
4	chr11:93344200-93346800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:93344400-93346200	Enhancers	Liver	Liver
6	chr11:93344400-93346600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:93344400-93347600	Enhancers	Fetal Intestine Small	intestine
8	chr11:93344600-93346400	Weak transcription	Small Intestine	intestine
9	chr11:93344800-93347400	Weak transcription	Gastric	stomach
10	chr11:93345000-93346800	Enhancers	Duodenum Mucosa	Duodenum

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