Variant report

Variant	rs58454195
Chromosome Location	chr11:93373810-93373811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93373748..93375964-chr11:93381168..93383462,2	K562	blood:
2	chr11:93372093..93374223-chr11:93472267..93473882,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10047479	0.91[AFR][1000 genomes]
rs10047481	0.91[AFR][1000 genomes]
rs10047484	0.91[AFR][1000 genomes]
rs10128669	0.94[AFR][1000 genomes]
rs10128725	0.94[AFR][1000 genomes]
rs10128726	0.90[AFR][1000 genomes]
rs10741470	0.85[ASN][1000 genomes]
rs10741471	0.85[ASN][1000 genomes]
rs10765628	0.85[ASN][1000 genomes]
rs10831085	0.85[ASN][1000 genomes]
rs11020467	0.87[AFR][1000 genomes]
rs11020468	0.87[AFR][1000 genomes]
rs11020469	0.87[AFR][1000 genomes]
rs11020477	0.85[ASN][1000 genomes]
rs12271543	0.90[AFR][1000 genomes]
rs12274112	0.90[AFR][1000 genomes]
rs12277621	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12278092	0.90[AFR][1000 genomes]
rs12278291	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12279657	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12284176	0.90[AFR][1000 genomes]
rs12291408	0.81[AFR][1000 genomes]
rs12293939	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13377252	0.91[AFR][1000 genomes]
rs13377541	0.91[AFR][1000 genomes]
rs16919124	0.90[AFR][1000 genomes]
rs1944100	0.85[ASN][1000 genomes]
rs1944101	0.85[ASN][1000 genomes]
rs1944105	0.81[ASN][1000 genomes]
rs1954994	0.85[ASN][1000 genomes]
rs2155246	0.85[ASN][1000 genomes]
rs2186686	0.85[ASN][1000 genomes]
rs4753097	0.85[ASN][1000 genomes]
rs4753099	0.85[ASN][1000 genomes]
rs4753488	0.85[ASN][1000 genomes]
rs60224981	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60410024	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61918547	0.94[AFR][1000 genomes]
rs61918550	0.94[AFR][1000 genomes]
rs61918551	0.90[AFR][1000 genomes]
rs61918553	0.90[AFR][1000 genomes]
rs61918554	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61918555	0.90[AFR][1000 genomes]
rs61918557	0.90[AFR][1000 genomes]
rs7113200	0.90[AFR][1000 genomes]
rs7130267	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7926876	0.85[ASN][1000 genomes]
rs7930519	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7937523	0.85[ASN][1000 genomes]
rs7941230	1.00[AFR][1000 genomes]
rs7949850	0.88[ASN][1000 genomes]
rs7952443	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93371600-93375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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