Variant report

Variant	rs1944103
Chromosome Location	chr11:93403434-93403435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1011993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10734163	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741470	1.00[EUR][1000 genomes]
rs10741471	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765625	0.82[AMR][1000 genomes]
rs10765626	0.82[AMR][1000 genomes]
rs10765627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765628	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831085	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831086	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10831088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11020477	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1784203	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944100	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944101	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1944105	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1944106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1954994	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155245	0.82[AMR][1000 genomes]
rs2155246	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155248	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2186686	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2509840	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237560	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4303195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4303196	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753097	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753099	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753488	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4753492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4753493	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4753495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs623510	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs628916	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs630648	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs631116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs642984	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs643924	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs648162	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs655279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101779	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121150	1.00[EUR][1000 genomes]
rs7127033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7926876	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937523	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939847	0.98[AFR][1000 genomes]
rs7940153	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942448	0.80[AFR][1000 genomes]
rs7949850	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395400-93404000	Weak transcription	Esophagus	oesophagus
2	chr11:93395400-93406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:93395400-93406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:93395400-93406800	Weak transcription	Lung	lung
5	chr11:93395400-93412200	Weak transcription	Gastric	stomach
6	chr11:93395400-93412200	Weak transcription	Pancreas	Pancrea
7	chr11:93395400-93417800	Weak transcription	Small Intestine	intestine
8	chr11:93395600-93403800	Weak transcription	Left Ventricle	heart
9	chr11:93395600-93403800	Weak transcription	Ovary	ovary
10	chr11:93395600-93404000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:93395600-93404200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:93395600-93408200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:93395600-93411800	Weak transcription	Aorta	Aorta
14	chr11:93395600-93412200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:93395600-93412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:93395600-93412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:93395600-93412600	Weak transcription	Colonic Mucosa	Colon
18	chr11:93395600-93417400	Weak transcription	Stomach Mucosa	stomach
19	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:93395800-93411800	Weak transcription	HSMMtube	muscle
21	chr11:93395800-93412200	Weak transcription	Thymus	Thymus
22	chr11:93395800-93413200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:93395800-93413400	Weak transcription	Right Ventricle	heart
24	chr11:93395800-93415800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:93396200-93404600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:93396200-93411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:93396400-93403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:93396400-93404000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:93396400-93404000	Weak transcription	Fetal Stomach	stomach
30	chr11:93396400-93406400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:93396400-93410400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:93396400-93412200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:93396400-93417600	Weak transcription	Fetal Heart	heart
34	chr11:93396600-93403800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:93396600-93403800	Weak transcription	Brain Anterior Caudate	brain
36	chr11:93396600-93407200	Weak transcription	Spleen	Spleen
37	chr11:93396600-93412000	Weak transcription	Psoas Muscle	Psoas
38	chr11:93396600-93413200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:93396600-93417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:93396800-93412600	Weak transcription	A549	lung
41	chr11:93396800-93413200	Weak transcription	NHLF	lung
42	chr11:93396800-93415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:93397600-93409600	Strong transcription	K562	blood
45	chr11:93397600-93416400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:93397800-93408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:93397800-93416200	Weak transcription	Fetal Brain Male	brain
49	chr11:93398000-93426200	Strong transcription	Hela-S3	cervix
50	chr11:93398400-93408600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links