Variant report

Variant	rs7953009
Chromosome Location	chr12:44929509-44929510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10880649	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880650	0.99[ASN][1000 genomes]
rs10880651	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182530	0.98[ASN][1000 genomes]
rs11182531	0.96[ASN][1000 genomes]
rs1493748	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552860	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901556	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1908179	0.96[ASN][1000 genomes]
rs2198338	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2218986	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2859835	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768555	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768556	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930799	0.96[ASN][1000 genomes]
rs7953156	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44904600-44936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:44909200-44939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:44912200-44932400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:44916000-44930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:44924400-44939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:44924800-44939800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:44925600-44936200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:44925800-44934000	Weak transcription	Fetal Brain Male	brain
10	chr12:44926400-44936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:44927400-44932000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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