Variant report

Variant	rs1552860
Chromosome Location	chr12:44926796-44926797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1037435	0.95[JPT][hapmap]
rs1037436	0.95[JPT][hapmap]
rs10785501	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10785505	0.95[JPT][hapmap]
rs10785506	0.95[JPT][hapmap]
rs10785507	0.90[JPT][hapmap]
rs10785509	0.90[JPT][hapmap]
rs10785511	0.90[JPT][hapmap]
rs10880649	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880650	0.99[ASN][1000 genomes]
rs10880651	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10880653	0.90[JPT][hapmap]
rs10880654	0.90[JPT][hapmap]
rs10880655	0.80[JPT][hapmap]
rs11182530	0.98[ASN][1000 genomes]
rs11182531	0.96[ASN][1000 genomes]
rs1349621	0.95[JPT][hapmap]
rs1376997	0.95[JPT][hapmap]
rs1377003	0.82[JPT][hapmap]
rs1377280	0.95[JPT][hapmap]
rs1452256	0.95[JPT][hapmap]
rs1452257	0.95[JPT][hapmap]
rs1493748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869253	0.95[JPT][hapmap]
rs1901556	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1908179	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2198338	0.92[ASN][1000 genomes]
rs2218986	0.89[ASN][1000 genomes]
rs2859835	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4143007	0.95[JPT][hapmap]
rs4768555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930799	0.96[ASN][1000 genomes]
rs728065	0.95[JPT][hapmap]
rs7953009	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966066	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44901800-44926800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:44904600-44936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:44909200-44939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:44912200-44932400	Weak transcription	Fetal Intestine Small	intestine
5	chr12:44916000-44930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:44919800-44928400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr12:44920400-44926800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:44924200-44927400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr12:44924400-44939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr12:44924800-44939800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:44925600-44936200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:44925800-44934000	Weak transcription	Fetal Brain Male	brain
14	chr12:44926400-44936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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