Variant report

Variant	rs10785501
Chromosome Location	chr12:44937884-44937885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1037435	0.90[JPT][hapmap]
rs1037436	0.90[JPT][hapmap]
rs10785505	0.91[JPT][hapmap]
rs10785506	0.91[JPT][hapmap]
rs10785507	0.86[JPT][hapmap]
rs10785509	0.85[JPT][hapmap]
rs10785511	0.85[JPT][hapmap]
rs10880649	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10880650	0.91[ASN][1000 genomes]
rs10880651	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10880653	0.85[JPT][hapmap]
rs10880654	0.85[JPT][hapmap]
rs11182530	0.92[ASN][1000 genomes]
rs11182531	0.94[ASN][1000 genomes]
rs1349621	0.91[JPT][hapmap]
rs1376997	0.91[JPT][hapmap]
rs1377280	0.90[JPT][hapmap]
rs1452256	0.90[JPT][hapmap]
rs1452257	0.91[JPT][hapmap]
rs1493748	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1552860	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869253	0.89[JPT][hapmap]
rs1901556	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1908179	0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2198338	0.89[ASN][1000 genomes]
rs2218986	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2859835	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4143007	0.90[JPT][hapmap]
rs4768555	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4768556	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61930799	0.94[ASN][1000 genomes]
rs728065	0.90[JPT][hapmap]
rs7953009	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7953156	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7966066	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44909200-44939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:44924400-44939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:44924800-44939800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:44936200-44938400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:44936600-44944400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:44936800-44940000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:44937600-44940600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:44937600-44947600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:44937800-44938200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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