Variant report

Variant	rs1901556
Chromosome Location	chr12:44936388-44936389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1037435	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs1037436	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs10785501	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10785505	0.95[JPT][hapmap]
rs10785506	0.95[JPT][hapmap]
rs10785507	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs10785509	0.90[JPT][hapmap]
rs10785511	0.90[JPT][hapmap]
rs10880649	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880650	0.96[ASN][1000 genomes]
rs10880651	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880653	0.90[JPT][hapmap]
rs10880654	0.90[JPT][hapmap]
rs11182530	0.96[ASN][1000 genomes]
rs11182531	0.98[ASN][1000 genomes]
rs1349621	0.95[JPT][hapmap]
rs1376997	0.95[JPT][hapmap]
rs1377003	0.82[JPT][hapmap]
rs1377280	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs1452256	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs1452257	0.95[JPT][hapmap]
rs1493748	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1552860	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1869253	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs1908179	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2198338	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2218986	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859835	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143007	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs4768555	0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768556	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61930799	0.98[ASN][1000 genomes]
rs728065	0.95[JPT][hapmap]
rs7953009	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7953156	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7966066	0.85[CHD][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1901556	ADAMTS20	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44904600-44936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:44909200-44939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:44924400-44939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:44924800-44939800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:44926400-44936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:44932400-44937200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr12:44935800-44937400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:44936200-44936600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:44936200-44937400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr12:44936200-44937600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:44936200-44938400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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