Variant report

Variant	rs7954242
Chromosome Location	chr12:25472779-25472780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4246235	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4460903	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6487471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7137453	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7297321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7970784	0.83[EUR][1000 genomes]
rs7975960	0.99[AFR][1000 genomes]
rs7979151	0.89[AFR][1000 genomes]
rs7979773	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25471600-25475400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:25472400-25472800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:25472400-25474600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:25472600-25473800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr12:25472600-25474200	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:25472600-25474200	Enhancers	Primary hematopoietic stem cells	blood
7	chr12:25472600-25474200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:25472600-25474400	Flanking Active TSS	GM12878-XiMat	blood
9	chr12:25472600-25475400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:25472600-25475400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:25472600-25477000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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