Variant report

Variant	rs7979151
Chromosome Location	chr12:25475261-25475262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4246235	1.00[CEU][hapmap]
rs4460903	0.90[AFR][1000 genomes]
rs4963870	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6487470	0.81[AFR][1000 genomes]
rs7137453	0.87[AFR][1000 genomes]
rs7297321	0.89[AFR][1000 genomes]
rs7954242	0.89[AFR][1000 genomes]
rs7975960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7979773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25471600-25475400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:25472600-25475400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr12:25472600-25475400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:25472600-25477000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:25473000-25475400	Enhancers	Primary T cells from cord blood	blood
6	chr12:25473200-25475400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr12:25473600-25475400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:25473800-25475400	Weak transcription	Primary B cells from cord blood	blood
9	chr12:25473800-25475400	Weak transcription	NH-A	brain
10	chr12:25473800-25475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:25473800-25478600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr12:25474000-25475400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr12:25474200-25475400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr12:25474200-25475400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:25474200-25475600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:25474400-25475400	Enhancers	GM12878-XiMat	blood
17	chr12:25474600-25475600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:25474600-25475600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:25474600-25476600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr12:25474600-25477400	Enhancers	Fetal Thymus	thymus
21	chr12:25474800-25477600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:25475000-25475400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:25475000-25475600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:25475000-25476600	Weak transcription	Fetal Heart	heart
25	chr12:25475200-25475600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr12:25475200-25476000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr12:25475200-25476000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr12:25475200-25476800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:25475200-25476800	Enhancers	HUVEC	blood vessel

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