Variant report

Variant	rs7955263
Chromosome Location	chr12:43355730-43355731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr12:43355010-43355832	ECC-1	luminal epithelium:	n/a	chr12:43355331-43355340 chr12:43355439-43355448
2	SP1	chr12:43354987-43355775	A549	lung:	n/a	n/a
3	EP300	chr12:43355095-43355922	Hela-S3	cervix:	n/a	chr12:43355504-43355518 chr12:43355594-43355608
4	CEBPB	chr12:43355058-43355752	HCT-116	colon:	n/a	chr12:43355626-43355643 chr12:43355507-43355518
5	REST	chr12:43355063-43355771	A549	lung:	n/a	n/a
6	CEBPB	chr12:43355121-43356590	Hela-S3	cervix:	n/a	chr12:43355626-43355643 chr12:43355507-43355518 chr12:43355988-43356001
7	CEBPB	chr12:43355122-43355855	MCF-7	breast:	n/a	chr12:43355626-43355643 chr12:43355507-43355518
8	GATA3	chr12:43354998-43355785	MCF-7	breast:	n/a	chr12:43355660-43355667 chr12:43355653-43355674 chr12:43355660-43355667 chr12:43355656-43355672 chr12:43355659-43355669 chr12:43355660-43355667
9	JUND	chr12:43355050-43355739	HCT-116	colon:	n/a	chr12:43355579-43355591
10	JUND	chr12:43355054-43355758	MCF-7	breast:	n/a	chr12:43355579-43355591
11	USF2	chr12:43355009-43355770	Hela-S3	cervix:	n/a	n/a
12	SP1	chr12:43355054-43355778	HCT-116	colon:	n/a	n/a
13	MXI1	chr12:43355168-43357112	SK-N-SH	brain:	n/a	n/a
14	NR2F2	chr12:43354977-43355756	MCF-7	breast:	n/a	n/a
15	NFIC	chr12:43354930-43356033	ECC-1	luminal epithelium:	n/a	n/a
16	SP1	chr12:43355002-43355759	HCT-116	colon:	n/a	n/a
17	JUND	chr12:43355033-43355750	T-47D	breast:	n/a	chr12:43355579-43355591
18	CEBPB	chr12:43355155-43355766	ECC-1	luminal epithelium:	n/a	chr12:43355626-43355643 chr12:43355507-43355518
19	POLR2A	chr12:43355313-43355774	MCF10A-Er-Src	breast:	n/a	n/a
20	JUND	chr12:43355159-43356512	Hela-S3	cervix:	n/a	chr12:43355579-43355591
21	GATA3	chr12:43355039-43355780	T-47D	breast:	n/a	chr12:43355660-43355667 chr12:43355653-43355674 chr12:43355660-43355667 chr12:43355656-43355672 chr12:43355659-43355669 chr12:43355660-43355667
22	EP300	chr12:43354932-43355846	A549	lung:	n/a	chr12:43355504-43355518 chr12:43355594-43355608
23	GATA3	chr12:43354912-43355913	A549	lung:	n/a	chr12:43355660-43355667 chr12:43355653-43355674 chr12:43355660-43355667 chr12:43355656-43355672 chr12:43355659-43355669 chr12:43355660-43355667
24	FOSL1	chr12:43355051-43355748	HCT-116	colon:	n/a	chr12:43355579-43355591
25	NFIC	chr12:43354955-43355790	ECC-1	luminal epithelium:	n/a	n/a
26	STAT3	chr12:43355081-43355778	Hela-S3	cervix:	n/a	n/a
27	EP300	chr12:43354969-43355913	ECC-1	luminal epithelium:	n/a	chr12:43355504-43355518 chr12:43355594-43355608
28	TCF7L2	chr12:43355155-43355805	PANC-1	pancreas:	n/a	n/a
29	RCOR1	chr12:43355073-43355833	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr12:43355107-43355802	ECC-1	luminal epithelium:	n/a	chr12:43355626-43355643 chr12:43355507-43355518
31	E2F4	chr12:43355259-43355964	MCF10A-Er-Src	breast:	n/a	n/a
32	RAD21	chr12:43355247-43357460	SK-N-SH	brain:	n/a	chr12:43357028-43357037 chr12:43356661-43356673
33	NRF1	chr12:43355125-43355914	Hela-S3	cervix:	n/a	n/a
34	FOXM1	chr12:43355130-43355760	MCF-7	breast:	n/a	n/a
35	TEAD4	chr12:43355045-43355746	A549	lung:	n/a	chr12:43355331-43355340 chr12:43355439-43355448
36	ATF3	chr12:43355159-43355758	HCT-116	colon:	n/a	n/a
37	SP1	chr12:43355030-43355734	A549	lung:	n/a	n/a
38	NR2F2	chr12:43355059-43355784	MCF-7	breast:	n/a	n/a
39	FOXM1	chr12:43354902-43355899	ECC-1	luminal epithelium:	n/a	n/a
40	TCF7L2	chr12:43354912-43355821	Hela-S3	cervix:	n/a	n/a
41	BCL3	chr12:43355078-43355775	A549	lung:	n/a	n/a
42	FOXM1	chr12:43354913-43355934	ECC-1	luminal epithelium:	n/a	n/a
43	FOS	chr12:43355197-43355808	MCF10A-Er-Src	breast:	n/a	chr12:43355579-43355591
44	TCF12	chr12:43354908-43355796	A549	lung:	n/a	n/a
45	JUN	chr12:43355122-43355733	Hela-S3	cervix:	n/a	chr12:43355504-43355517 chr12:43355579-43355591
46	SRF	chr12:43355106-43355746	ECC-1	luminal epithelium:	n/a	n/a
47	TCF12	chr12:43355022-43355784	ECC-1	luminal epithelium:	n/a	n/a
48	GATA3	chr12:43355065-43355812	MCF-7	breast:	n/a	chr12:43355660-43355667 chr12:43355653-43355674 chr12:43355660-43355667 chr12:43355656-43355672 chr12:43355659-43355669 chr12:43355660-43355667
49	TEAD4	chr12:43355004-43355751	ECC-1	luminal epithelium:	n/a	chr12:43355331-43355340 chr12:43355439-43355448
50	STAT1	chr12:43355192-43355783	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:43354007..43356830-chr12:43671238..43673003,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257849	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10748346	0.82[AFR][1000 genomes]
rs11181817	1.00[AFR][1000 genomes]
rs12317369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1520819	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17092544	0.89[EUR][1000 genomes]
rs17585302	0.83[EUR][1000 genomes]
rs2043552	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2043553	1.00[AFR][1000 genomes]
rs4768472	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7958072	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7968365	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7968724	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43350800-43356200	Weak transcription	Fetal Lung	lung
2	chr12:43351400-43357000	Enhancers	HMEC	breast
3	chr12:43351400-43357800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:43351400-43357800	Enhancers	HUVEC	blood vessel
5	chr12:43351600-43357000	Enhancers	NHEK	skin
6	chr12:43351800-43356800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:43351800-43359600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:43353200-43357000	Enhancers	Hela-S3	cervix
9	chr12:43353600-43356600	Enhancers	NH-A	brain
10	chr12:43354000-43357000	Enhancers	HSMMtube	muscle
11	chr12:43354000-43359800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:43354400-43357800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:43355000-43355800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr12:43355000-43356000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:43355000-43356200	Enhancers	Osteobl	bone
16	chr12:43355200-43355800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr12:43355400-43355800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr12:43355400-43356200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:43355400-43357200	Enhancers	A549	lung
20	chr12:43355600-43356600	Enhancers	HSMM	muscle
21	chr12:43355600-43357000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr12:43355600-43357000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr12:43355600-43369000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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