Variant report

Variant	rs7968724
Chromosome Location	chr12:43359095-43359096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10748346	0.82[AFR][1000 genomes]
rs11181817	1.00[AFR][1000 genomes]
rs12317369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1520819	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17092544	0.91[EUR][1000 genomes]
rs17513656	1.00[CEU][hapmap]
rs17585302	0.85[EUR][1000 genomes]
rs17585588	1.00[CEU][hapmap]
rs2043552	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2043553	1.00[AFR][1000 genomes]
rs4768472	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768476	1.00[CEU][hapmap]
rs7955263	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7958072	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7968365	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43351800-43359600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:43354000-43359800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:43355600-43369000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:43356200-43360000	Enhancers	Fetal Lung	lung
5	chr12:43356800-43359200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:43357000-43359600	Weak transcription	HMEC	breast
7	chr12:43357000-43359600	Weak transcription	NHEK	skin
8	chr12:43357000-43362600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:43357000-43362600	Weak transcription	Hela-S3	cervix
10	chr12:43357600-43359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:43357800-43359400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr12:43358000-43363400	Weak transcription	HSMM	muscle
13	chr12:43358600-43359600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:43358800-43362200	Weak transcription	A549	lung
15	chr12:43359000-43360800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:43359000-43363400	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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