Variant report

Variant	rs79552925
Chromosome Location	chr15:99864060-99864061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr15:99864060-99864663	A549	lung:	n/a	n/a
2	FOXM1	chr15:99863760-99865090	ECC-1	luminal epithelium:	n/a	n/a
3	NFIC	chr15:99863950-99864889	ECC-1	luminal epithelium:	n/a	n/a
4	FOXM1	chr15:99863915-99865005	ECC-1	luminal epithelium:	n/a	n/a
5	TCF12	chr15:99864009-99864955	ECC-1	luminal epithelium:	n/a	n/a
6	BCL3	chr15:99863946-99865300	A549	lung:	n/a	n/a
7	SP1	chr15:99863948-99865275	A549	lung:	n/a	n/a
8	GTF3C2	chr15:99864021-99864789	Hela-S3	cervix:	n/a	n/a
9	FOSL2	chr15:99863627-99865055	A549	lung:	n/a	chr15:99864980-99864989
10	GATA3	chr15:99863925-99865178	A549	lung:	n/a	n/a
11	GABPA	chr15:99863973-99864845	A549	lung:	n/a	n/a
12	FOSL1	chr15:99864048-99865031	HCT-116	colon:	n/a	chr15:99864980-99864989
13	MAX	chr15:99863977-99865316	A549	lung:	n/a	n/a
14	TCF12	chr15:99863854-99865392	A549	lung:	n/a	n/a
15	JUND	chr15:99864049-99865012	HCT-116	colon:	n/a	chr15:99864980-99864989
16	EP300	chr15:99863966-99865304	A549	lung:	n/a	chr15:99865125-99865132 chr15:99864949-99864959 chr15:99864940-99864950
17	FOS	chr15:99863963-99864990	MCF10A-Er-Src	breast:	n/a	chr15:99864424-99864435 chr15:99864366-99864377 chr15:99864980-99864989
18	SP1	chr15:99863540-99865295	A549	lung:	n/a	n/a
19	BCL3	chr15:99864031-99864882	A549	lung:	n/a	n/a
20	CBX3	chr15:99864037-99864951	HCT-116	colon:	n/a	n/a
21	TCF12	chr15:99863992-99864621	A549	lung:	n/a	n/a
22	TEAD4	chr15:99864040-99864964	ECC-1	luminal epithelium:	n/a	n/a
23	EP300	chr15:99863972-99865091	ECC-1	luminal epithelium:	n/a	chr15:99864949-99864959 chr15:99864940-99864950
24	TCF12	chr15:99864047-99865052	ECC-1	luminal epithelium:	n/a	n/a
25	MAX	chr15:99864058-99865009	ECC-1	luminal epithelium:	n/a	n/a
26	FOXA2	chr15:99863813-99865262	A549	lung:	n/a	chr15:99864941-99864953 chr15:99864923-99864935 chr15:99864240-99864252
27	ESR1	chr15:99864050-99864815	ECC-1	luminal epithelium:	n/a	n/a
28	JUND	chr15:99864053-99864826	A549	lung:	n/a	n/a
29	NFIC	chr15:99864053-99864822	SK-N-SH	brain:	n/a	n/a
30	NFIC	chr15:99864017-99865105	ECC-1	luminal epithelium:	n/a	n/a
31	EP300	chr15:99864052-99864958	ECC-1	luminal epithelium:	n/a	chr15:99864940-99864950
32	CEBPB	chr15:99863929-99864905	A549	lung:	n/a	n/a
33	NR3C1	chr15:99864050-99864590	A549	lung:	n/a	n/a
34	ATF3	chr15:99863947-99864628	A549	lung:	n/a	n/a
35	EP300	chr15:99863826-99865396	A549	lung:	n/a	chr15:99865125-99865132 chr15:99864949-99864959 chr15:99864940-99864950
36	SP1	chr15:99864053-99865095	HCT-116	colon:	n/a	n/a
37	TEAD4	chr15:99864021-99864977	ECC-1	luminal epithelium:	n/a	n/a
38	REST	chr15:99863825-99864833	A549	lung:	n/a	n/a
39	FOSL2	chr15:99863998-99864900	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:99864059-99864109	AG09319	gingival:	n/a
2	chr15:99864059-99864109	LNCaP	prostate:	n/a
3	chr15:99864059-99864109	AG04450	lung:	fetal
4	chr15:99864059-99864109	HL-60	blood:	n/a
5	chr15:99864059-99864109	H1-hESC	embryonic stem cell:	embryo
6	chr15:99864059-99864109	ECC-1	luminal epithelium:	n/a
7	chr15:99864059-99864109	HUVEC	blood vessel:	n/a
8	chr15:99864059-99864109	U87	brain:	n/a
9	chr15:99864059-99864109	MCF-7	breast:	n/a
10	chr15:99864059-99864109	SKMC	muscle:	n/a
11	chr15:99864059-99864109	HRPEpiC	eye:	n/a
12	chr15:99864059-99864109	HepG2	liver:	n/a
13	chr15:99864059-99864109	IMR90	lung:	fetal
14	chr15:99864059-99864109	SAEC	small airway:	n/a
15	chr15:99864059-99864109	HCM	heart:	n/a
16	chr15:99864059-99864109	HCPEpiC	choroid plexus:	n/a
17	chr15:99864059-99864109	HIPEpiC	eye:	n/a
18	chr15:99864059-99864109	AG04449	skin:	fetal
19	chr15:99864059-99864109	HRCEpiC	kidney:	n/a
20	chr15:99864059-99864109	HCT-116	colon:	n/a
21	chr15:99864059-99864109	GM12878	blood:	n/a
22	chr15:99864059-99864109	AoSMC	blood vessel:	n/a
23	chr15:99864059-99864109	K562	blood:	n/a
24	chr15:99864059-99864109	AG09309	skin:	n/a
25	chr15:99864059-99864109	HEEpiC	esophagus:	n/a
26	chr15:99864059-99864109	T-47D	breast:	n/a
27	chr15:99864059-99864109	SK-N-MC	brain:	n/a
28	chr15:99864059-99864109	HCF	heart:	n/a
29	chr15:99864059-99864109	BE2_C	brain:	n/a
30	chr15:99864059-99864109	NB4	blood:	n/a
31	chr15:99864059-99864109	SK-N-SH_RA	brain:	n/a
32	chr15:99864059-99864109	GM12892	blood:	n/a
33	chr15:99864059-99864109	CMK	blood:	n/a
34	chr15:99864059-99864109	HAEpiC	amniotic membrane:	n/a
35	chr15:99864059-99864109	BJ	skin:	n/a
36	chr15:99864059-99864109	PFSK-1	brain:	n/a
37	chr15:99864059-99864109	ProgFib	skin:	n/a
38	chr15:99864059-99864109	A549	lung:	n/a
39	chr15:99864059-99864109	HEK293	kidney:	embryo
40	chr15:99864059-99864109	RPTEC	kidney:	n/a
41	chr15:99864059-99864109	NHDF-neo	bronchial:	n/a
42	chr15:99864059-99864109	Jurkat	blood:	n/a
43	chr15:99864059-99864109	PANC-1	pancreas:	n/a
44	chr15:99864059-99864109	Caco-2	colon:	n/a
45	chr15:99864059-99864109	SK-N-SH	brain:	n/a
46	chr15:99864059-99864109	Hela-S3	cervix:	n/a
47	chr15:99864059-99864109	Hepatocyte	liver:	n/a
48	chr15:99864059-99864109	GM12891	blood:	n/a
49	chr15:99864059-99864109	GM19239	blood:	n/a
50	chr15:99864059-99864109	HNPCEpiC	eye:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99856389..99859314-chr15:99863031..99866195,3	MCF-7	breast:

No data

Variant related genes	Relation type
LRRC28	TF binding region
ENSG00000268730	TF binding region
ENSG00000268730	CpG island
LRRC28	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
14	nsv1052528	chr15:99736977-99874210	Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv1045367	chr15:99781626-99892182	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
18	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
19	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
20	esv3426665	chr15:99862575-99866059	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99793000-99866600	Weak transcription	Gastric	stomach
2	chr15:99833200-99875800	Weak transcription	Thymus	Thymus
3	chr15:99835200-99864200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:99847400-99877200	Weak transcription	Ovary	ovary
5	chr15:99853000-99876000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:99853200-99875400	Weak transcription	Fetal Thymus	thymus
7	chr15:99853600-99875800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:99854200-99864200	Weak transcription	Left Ventricle	heart
9	chr15:99854400-99876000	Weak transcription	Dnd41	blood
10	chr15:99858600-99876600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:99859400-99906600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:99860400-99864400	Enhancers	HMEC	breast
13	chr15:99860400-99864800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:99860600-99864200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:99860600-99865000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:99860600-99867200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:99860600-99867200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:99860600-99869200	Enhancers	HepG2	liver
19	chr15:99861000-99864200	Weak transcription	Aorta	Aorta
20	chr15:99861000-99865600	Weak transcription	Psoas Muscle	Psoas
21	chr15:99861800-99876600	Weak transcription	Primary T cells from cord blood	blood
22	chr15:99862400-99864400	Enhancers	NHEK	skin
23	chr15:99862800-99864200	Enhancers	Hela-S3	cervix
24	chr15:99862800-99865400	Flanking Active TSS	A549	lung
25	chr15:99863000-99864200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:99863000-99864200	Enhancers	HSMMtube	muscle
27	chr15:99863000-99865400	Enhancers	HSMM	muscle
28	chr15:99863000-99866800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:99863200-99864200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:99863200-99881200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:99863200-99899800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:99863400-99865200	Enhancers	NHLF	lung
33	chr15:99863600-99864200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:99863600-99866000	Enhancers	Liver	Liver
35	chr15:99863800-99864200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:99863800-99865200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:99863800-99865200	Enhancers	Fetal Heart	heart
38	chr15:99864000-99864200	Enhancers	GM12878-XiMat	blood
39	chr15:99864000-99864200	Flanking Active TSS	NH-A	brain
40	chr15:99864000-99864400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:99864000-99864400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:99864000-99864400	Flanking Active TSS	Osteobl	bone
43	chr15:99864000-99864600	Enhancers	HUVEC	blood vessel
44	chr15:99864000-99864800	Enhancers	Primary B cells from peripheral blood	blood
45	chr15:99864000-99865200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr15:99864000-99865200	Flanking Active TSS	NHDF-Ad	bronchial

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