Variant report

Variant	rs7957667
Chromosome Location	chr12:51666905-51666906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51659542..51662087-chr12:51665663..51667547,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10747609	0.81[AMR][1000 genomes]
rs10783428	0.80[AMR][1000 genomes]
rs10876159	0.81[AMR][1000 genomes]
rs12424285	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1877260	0.81[AMR][1000 genomes]
rs1877261	0.80[AMR][1000 genomes]
rs1975004	0.81[AMR][1000 genomes]
rs2271821	0.81[AMR][1000 genomes]
rs3951438	0.80[AMR][1000 genomes]
rs4761804	0.85[EUR][1000 genomes]
rs4761814	0.80[AMR][1000 genomes]
rs4761815	0.80[AMR][1000 genomes]
rs4761981	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6580820	0.80[AMR][1000 genomes]
rs7133495	0.84[AMR][1000 genomes]
rs7136290	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296747	0.85[AMR][1000 genomes]
rs7316433	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51664600-51683200	Weak transcription	Spleen	Spleen
2	chr12:51664600-51692800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:51664800-51685800	Weak transcription	Esophagus	oesophagus
4	chr12:51665000-51673800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:51665000-51674600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:51665200-51669200	Weak transcription	Colonic Mucosa	Colon
7	chr12:51665200-51670200	Weak transcription	Primary T cells from cord blood	blood
8	chr12:51665200-51673200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:51665200-51674200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:51665200-51674400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:51665200-51674800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:51665400-51668600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:51665400-51668600	Weak transcription	Fetal Intestine Large	intestine
14	chr12:51665400-51668800	Weak transcription	A549	lung
15	chr12:51665400-51673800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr12:51665400-51674200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:51665400-51674400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr12:51665400-51674400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:51665400-51674400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:51665400-51674600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr12:51665400-51674800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr12:51665400-51675000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr12:51665400-51679800	Weak transcription	Liver	Liver
24	chr12:51665600-51670000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr12:51665600-51674000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:51665600-51674400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr12:51665600-51678200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr12:51665800-51668600	Weak transcription	Fetal Intestine Small	intestine
29	chr12:51666000-51669000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:51666200-51668400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr12:51666200-51668600	Weak transcription	Stomach Mucosa	stomach
32	chr12:51666200-51670000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr12:51666400-51674200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr12:51666800-51667000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:51666800-51668400	Weak transcription	Rectal Mucosa Donor 29	rectum

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