Variant report

Variant	rs7961228
Chromosome Location	chr12:42691916-42691917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42691640..42695316-chr12:42718541..42721156,4	MCF-7	breast:
2	chr12:42690670..42692554-chr12:42699128..42701170,2	K562	blood:

Variant related genes	Relation type
ENSG00000134283	Chromatin interaction
ENSG00000139168	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10160853	0.94[ASN][1000 genomes]
rs10506175	0.94[ASN][1000 genomes]
rs11181360	0.94[ASN][1000 genomes]
rs11181373	0.94[ASN][1000 genomes]
rs1139095	0.88[ASN][1000 genomes]
rs11830387	0.88[ASN][1000 genomes]
rs11832838	0.88[ASN][1000 genomes]
rs12297206	0.97[ASN][1000 genomes]
rs12300188	0.97[ASN][1000 genomes]
rs12312515	0.94[ASN][1000 genomes]
rs12315471	0.94[ASN][1000 genomes]
rs12317772	0.94[ASN][1000 genomes]
rs12318401	0.94[ASN][1000 genomes]
rs17091061	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17091083	0.88[ASN][1000 genomes]
rs17091094	0.88[ASN][1000 genomes]
rs17091138	0.88[ASN][1000 genomes]
rs17091141	0.88[ASN][1000 genomes]
rs17091163	0.88[ASN][1000 genomes]
rs17091193	0.88[ASN][1000 genomes]
rs1962526	0.88[ASN][1000 genomes]
rs1987127	1.00[ASN][1000 genomes]
rs2305423	0.88[ASN][1000 genomes]
rs2406676	0.88[ASN][1000 genomes]
rs2406677	0.88[ASN][1000 genomes]
rs3747559	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3810787	0.80[EUR][1000 genomes]
rs3911246	0.88[ASN][1000 genomes]
rs57447201	0.88[ASN][1000 genomes]
rs57653125	0.95[EUR][1000 genomes]
rs58594062	0.88[ASN][1000 genomes]
rs59423833	0.88[ASN][1000 genomes]
rs59501472	0.88[ASN][1000 genomes]
rs59876649	0.92[ASN][1000 genomes]
rs60092940	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60287587	0.94[ASN][1000 genomes]
rs60598518	0.88[ASN][1000 genomes]
rs60659836	0.88[ASN][1000 genomes]
rs73114487	0.94[ASN][1000 genomes]
rs73116432	1.00[ASN][1000 genomes]
rs73116492	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73118486	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73120476	0.88[ASN][1000 genomes]
rs73120499	0.88[ASN][1000 genomes]
rs73124406	0.88[ASN][1000 genomes]
rs73126404	0.88[ASN][1000 genomes]
rs73126407	0.88[ASN][1000 genomes]
rs73126412	0.88[ASN][1000 genomes]
rs73126433	0.85[ASN][1000 genomes]
rs73127418	0.94[ASN][1000 genomes]
rs73127421	0.90[ASN][1000 genomes]
rs73127428	0.93[ASN][1000 genomes]
rs73127435	0.90[ASN][1000 genomes]
rs73131138	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1048971	chr12:42651976-42801204	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
4	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	esv1809322	chr12:42682065-42699107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42690800-42706400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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