Variant report

Variant	rs73116432
Chromosome Location	chr12:42659785-42659786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42652103..42654567-chr12:42656993..42659814,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10160853	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10506175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181360	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11181373	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1139095	0.88[ASN][1000 genomes]
rs11830387	0.88[ASN][1000 genomes]
rs11832838	0.88[ASN][1000 genomes]
rs12297206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12300188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12312515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12315471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12317772	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12318401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17091061	0.90[ASN][1000 genomes]
rs17091083	0.88[ASN][1000 genomes]
rs17091094	0.88[ASN][1000 genomes]
rs17091138	0.88[ASN][1000 genomes]
rs17091141	0.88[ASN][1000 genomes]
rs17091163	0.88[ASN][1000 genomes]
rs17091193	0.88[ASN][1000 genomes]
rs1962526	0.88[ASN][1000 genomes]
rs1987127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305423	0.88[ASN][1000 genomes]
rs2406566	1.00[EUR][1000 genomes]
rs2406676	0.88[ASN][1000 genomes]
rs2406677	0.88[ASN][1000 genomes]
rs3747559	0.90[ASN][1000 genomes]
rs3911246	0.88[ASN][1000 genomes]
rs57447201	0.88[ASN][1000 genomes]
rs58594062	0.88[ASN][1000 genomes]
rs59423833	0.88[ASN][1000 genomes]
rs59501472	0.88[ASN][1000 genomes]
rs59876649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60092940	0.93[ASN][1000 genomes]
rs60278477	1.00[EUR][1000 genomes]
rs60287587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60598518	0.88[ASN][1000 genomes]
rs60659836	0.88[ASN][1000 genomes]
rs60870773	1.00[EUR][1000 genomes]
rs61647009	1.00[EUR][1000 genomes]
rs73114487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73114498	1.00[EUR][1000 genomes]
rs73116429	1.00[EUR][1000 genomes]
rs73116441	1.00[EUR][1000 genomes]
rs73116492	0.90[ASN][1000 genomes]
rs73118486	0.88[ASN][1000 genomes]
rs73120476	0.88[ASN][1000 genomes]
rs73120499	0.88[ASN][1000 genomes]
rs73124406	0.88[ASN][1000 genomes]
rs73126404	0.88[ASN][1000 genomes]
rs73126407	0.88[ASN][1000 genomes]
rs73126412	0.88[ASN][1000 genomes]
rs73126433	0.85[ASN][1000 genomes]
rs73127416	1.00[EUR][1000 genomes]
rs73127418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73127421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73127428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73127435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73127445	1.00[EUR][1000 genomes]
rs73131138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73131166	1.00[EUR][1000 genomes]
rs7961228	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv826351	chr12:42584218-42676281	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv826352	chr12:42593124-42675255	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3397788	chr12:42636734-42665519	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1048971	chr12:42651976-42801204	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42654200-42660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:42659600-42667800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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