Variant report

Variant	rs7979276
Chromosome Location	chr12:20912200-20912201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10841602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10841618	0.98[ASN][1000 genomes]
rs10841643	0.92[AFR][1000 genomes]
rs11045444	0.98[ASN][1000 genomes]
rs11045449	0.98[ASN][1000 genomes]
rs11045450	0.98[ASN][1000 genomes]
rs11045454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11045456	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11045457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11045463	0.81[ASN][1000 genomes]
rs11045475	0.82[ASN][1000 genomes]
rs11045498	0.88[AFR][1000 genomes]
rs11045499	0.92[AFR][1000 genomes]
rs11502651	0.86[ASN][1000 genomes]
rs11502654	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11614998	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12300737	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12301524	0.88[AFR][1000 genomes]
rs12307809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12310705	0.98[ASN][1000 genomes]
rs12311665	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12312208	0.82[ASN][1000 genomes]
rs12315003	0.88[AFR][1000 genomes]
rs56239709	0.81[ASN][1000 genomes]
rs61247324	0.82[ASN][1000 genomes]
rs7314930	0.82[ASN][1000 genomes]
rs7315037	0.82[ASN][1000 genomes]
rs74067212	0.92[AFR][1000 genomes]
rs74067215	0.81[AFR][1000 genomes]
rs7952976	0.93[ASN][1000 genomes]
rs7964797	0.98[ASN][1000 genomes]
rs7968656	0.84[AFR][1000 genomes]
rs7970323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7978273	0.81[AFR][1000 genomes]
rs7980917	0.98[ASN][1000 genomes]
rs9804710	0.98[ASN][1000 genomes]
rs9804803	0.98[ASN][1000 genomes]
rs9804804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9805136	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1039951	chr12:20880417-20941238	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1051454	chr12:20893994-20999635	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20892800-20922200	Weak transcription	Aorta	Aorta

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